Gene : Eucgr.D00321 E. grandis v2.0
Defline:  (1 of 5) PTHR21649:SF26 - CHLOROPHYLL A-B BINDING PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  253
Name:  ? Eucgr.D00321 Secondary Identifier:  ? PAC:32050600
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00321 0.5kb upstream 0.5kb upstream 1624 true Chr04: 5513733-5515356 Eucalyptus grandis
Eucgr.D00321 0.5kb upstream 0.5kb upstream 500 false Chr04: 5514857-5515356 Eucalyptus grandis
Eucgr.D00321 0.5kb downstream 0.5kb downstream 1624 true Chr04: 5513233-5514856 Eucalyptus grandis
Eucgr.D00321 0.5kb downstream 0.5kb downstream 500 false Chr04: 5513233-5513732 Eucalyptus grandis
Eucgr.D00321 1.0kb upstream 1.0kb upstream 2124 true Chr04: 5513733-5515856 Eucalyptus grandis
Eucgr.D00321 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5514857-5515856 Eucalyptus grandis
Eucgr.D00321 1.0kb downstream 1.0kb downstream 2124 true Chr04: 5512733-5514856 Eucalyptus grandis
Eucgr.D00321 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5512733-5513732 Eucalyptus grandis
Eucgr.D00321 2.0kb upstream 2.0kb upstream 3124 true Chr04: 5513733-5516856 Eucalyptus grandis
Eucgr.D00321 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5514857-5516856 Eucalyptus grandis
Eucgr.D00321 2.0kb downstream 2.0kb downstream 3124 true Chr04: 5511733-5514856 Eucalyptus grandis
Eucgr.D00321 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5511733-5513732 Eucalyptus grandis
Eucgr.D00321 5.0kb upstream 5.0kb upstream 6124 true Chr04: 5513733-5519856 Eucalyptus grandis
Eucgr.D00321 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5514857-5519856 Eucalyptus grandis
Eucgr.D00321 5.0kb downstream 5.0kb downstream 6124 true Chr04: 5508733-5514856 Eucalyptus grandis
Eucgr.D00321 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5508733-5513732 Eucalyptus grandis
Eucgr.D00321 10.0kb upstream 10.0kb upstream 11124 true Chr04: 5513733-5524856 Eucalyptus grandis
Eucgr.D00321 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5514857-5524856 Eucalyptus grandis
Eucgr.D00321 10.0kb downstream 10.0kb downstream 11124 true Chr04: 5503733-5514856 Eucalyptus grandis
Eucgr.D00321 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5503733-5513732 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 93.229 0.0 206.981 High High
cufflinks 5.39766 0.0 14.2627    
cufflinks 21.3574 0.0 49.7334    
cufflinks 1.84609 0.0 5.51115    
cufflinks 1.22581 0.0 3.79151   Low
cufflinks 126.879 0.0 285.109 High High

0 Strain