Gene : Eucgr.D00971 E. grandis v2.0
Defline:  (1 of 1) PTHR13421:SF16 - SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 Genomic Order:  973
Name:  ? Eucgr.D00971 Secondary Identifier:  ? PAC:32050142
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00971 0.5kb upstream 0.5kb upstream 4809 true Chr04: 21122005-21126813 Eucalyptus grandis
Eucgr.D00971 0.5kb upstream 0.5kb upstream 500 false Chr04: 21126314-21126813 Eucalyptus grandis
Eucgr.D00971 0.5kb downstream 0.5kb downstream 4809 true Chr04: 21121505-21126313 Eucalyptus grandis
Eucgr.D00971 0.5kb downstream 0.5kb downstream 500 false Chr04: 21121505-21122004 Eucalyptus grandis
Eucgr.D00971 1.0kb upstream 1.0kb upstream 5309 true Chr04: 21122005-21127313 Eucalyptus grandis
Eucgr.D00971 1.0kb upstream 1.0kb upstream 1000 false Chr04: 21126314-21127313 Eucalyptus grandis
Eucgr.D00971 1.0kb downstream 1.0kb downstream 5309 true Chr04: 21121005-21126313 Eucalyptus grandis
Eucgr.D00971 1.0kb downstream 1.0kb downstream 1000 false Chr04: 21121005-21122004 Eucalyptus grandis
Eucgr.D00971 2.0kb upstream 2.0kb upstream 6309 true Chr04: 21122005-21128313 Eucalyptus grandis
Eucgr.D00971 2.0kb upstream 2.0kb upstream 2000 false Chr04: 21126314-21128313 Eucalyptus grandis
Eucgr.D00971 2.0kb downstream 2.0kb downstream 6309 true Chr04: 21120005-21126313 Eucalyptus grandis
Eucgr.D00971 2.0kb downstream 2.0kb downstream 2000 false Chr04: 21120005-21122004 Eucalyptus grandis
Eucgr.D00971 5.0kb upstream 5.0kb upstream 9309 true Chr04: 21122005-21131313 Eucalyptus grandis
Eucgr.D00971 5.0kb upstream 5.0kb upstream 5000 false Chr04: 21126314-21131313 Eucalyptus grandis
Eucgr.D00971 5.0kb downstream 5.0kb downstream 9309 true Chr04: 21117005-21126313 Eucalyptus grandis
Eucgr.D00971 5.0kb downstream 5.0kb downstream 5000 false Chr04: 21117005-21122004 Eucalyptus grandis
Eucgr.D00971 10.0kb upstream 10.0kb upstream 14309 true Chr04: 21122005-21136313 Eucalyptus grandis
Eucgr.D00971 10.0kb upstream 10.0kb upstream 10000 false Chr04: 21126314-21136313 Eucalyptus grandis
Eucgr.D00971 10.0kb downstream 10.0kb downstream 14309 true Chr04: 21112005-21126313 Eucalyptus grandis
Eucgr.D00971 10.0kb downstream 10.0kb downstream 10000 false Chr04: 21112005-21122004 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050343 5270 Rosid View MSA
123737692 5271 Pentapetalae View MSA
122795479 5272 Eudicot View MSA
122043985 5273 Angiosperm View MSA
121347836 5274 Embryophyte View MSA
123424819 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.99293 0.0 15.2437   Low
cufflinks 13.9086 0.0 38.8225    
cufflinks 6.13824 0.0 16.639    
cufflinks 6.63645 0.0 17.2407    
cufflinks 20.2519 0.0 47.634   High
cufflinks 5.60902 0.0 16.0218    

0 Strain