Gene : Eucgr.D00875 E. grandis v2.0
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  675
Name:  ? Eucgr.D00875 Secondary Identifier:  ? PAC:32049910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00875 0.5kb upstream 0.5kb upstream 2452 true Chr04: 15119725-15122176 Eucalyptus grandis
Eucgr.D00875 0.5kb upstream 0.5kb upstream 500 false Chr04: 15119725-15120224 Eucalyptus grandis
Eucgr.D00875 0.5kb downstream 0.5kb downstream 2452 true Chr04: 15120225-15122676 Eucalyptus grandis
Eucgr.D00875 0.5kb downstream 0.5kb downstream 500 false Chr04: 15122177-15122676 Eucalyptus grandis
Eucgr.D00875 1.0kb upstream 1.0kb upstream 2952 true Chr04: 15119225-15122176 Eucalyptus grandis
Eucgr.D00875 1.0kb upstream 1.0kb upstream 1000 false Chr04: 15119225-15120224 Eucalyptus grandis
Eucgr.D00875 1.0kb downstream 1.0kb downstream 2952 true Chr04: 15120225-15123176 Eucalyptus grandis
Eucgr.D00875 1.0kb downstream 1.0kb downstream 1000 false Chr04: 15122177-15123176 Eucalyptus grandis
Eucgr.D00875 2.0kb upstream 2.0kb upstream 3952 true Chr04: 15118225-15122176 Eucalyptus grandis
Eucgr.D00875 2.0kb upstream 2.0kb upstream 2000 false Chr04: 15118225-15120224 Eucalyptus grandis
Eucgr.D00875 2.0kb downstream 2.0kb downstream 3952 true Chr04: 15120225-15124176 Eucalyptus grandis
Eucgr.D00875 2.0kb downstream 2.0kb downstream 2000 false Chr04: 15122177-15124176 Eucalyptus grandis
Eucgr.D00875 5.0kb upstream 5.0kb upstream 6952 true Chr04: 15115225-15122176 Eucalyptus grandis
Eucgr.D00875 5.0kb upstream 5.0kb upstream 5000 false Chr04: 15115225-15120224 Eucalyptus grandis
Eucgr.D00875 5.0kb downstream 5.0kb downstream 6952 true Chr04: 15120225-15127176 Eucalyptus grandis
Eucgr.D00875 5.0kb downstream 5.0kb downstream 5000 false Chr04: 15122177-15127176 Eucalyptus grandis
Eucgr.D00875 10.0kb upstream 10.0kb upstream 11952 true Chr04: 15110225-15122176 Eucalyptus grandis
Eucgr.D00875 10.0kb upstream 10.0kb upstream 10000 false Chr04: 15110225-15120224 Eucalyptus grandis
Eucgr.D00875 10.0kb downstream 10.0kb downstream 11952 true Chr04: 15120225-15132176 Eucalyptus grandis
Eucgr.D00875 10.0kb downstream 10.0kb downstream 10000 false Chr04: 15122177-15132176 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071286 5270 Rosid View MSA
123743446 5271 Pentapetalae View MSA
122788248 5272 Eudicot View MSA
122047755 5273 Angiosperm View MSA
121310787 5274 Embryophyte View MSA
123348188 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0178 0.0 5.37148    
cufflinks 0.344849 0.0 1.11023 Low Low
cufflinks 1.57363 0.0 4.27757    
cufflinks 1.44898 0.0 3.95407    
cufflinks 1.72556 0.0 4.66004    
cufflinks 4.17708 0.0 10.3817   High

0 Strain