Gene : Eucgr.D01730 E. grandis v2.0
Defline:  (1 of 2) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1406
Name:  ? Eucgr.D01730 Secondary Identifier:  ? PAC:32050331
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D01730 0.5kb upstream 0.5kb upstream 5197 true Chr04: 30817412-30822608 Eucalyptus grandis
Eucgr.D01730 0.5kb upstream 0.5kb upstream 500 false Chr04: 30822109-30822608 Eucalyptus grandis
Eucgr.D01730 0.5kb downstream 0.5kb downstream 5197 true Chr04: 30816912-30822108 Eucalyptus grandis
Eucgr.D01730 0.5kb downstream 0.5kb downstream 500 false Chr04: 30816912-30817411 Eucalyptus grandis
Eucgr.D01730 1.0kb upstream 1.0kb upstream 5697 true Chr04: 30817412-30823108 Eucalyptus grandis
Eucgr.D01730 1.0kb upstream 1.0kb upstream 1000 false Chr04: 30822109-30823108 Eucalyptus grandis
Eucgr.D01730 1.0kb downstream 1.0kb downstream 5697 true Chr04: 30816412-30822108 Eucalyptus grandis
Eucgr.D01730 1.0kb downstream 1.0kb downstream 1000 false Chr04: 30816412-30817411 Eucalyptus grandis
Eucgr.D01730 2.0kb upstream 2.0kb upstream 6697 true Chr04: 30817412-30824108 Eucalyptus grandis
Eucgr.D01730 2.0kb upstream 2.0kb upstream 2000 false Chr04: 30822109-30824108 Eucalyptus grandis
Eucgr.D01730 2.0kb downstream 2.0kb downstream 6697 true Chr04: 30815412-30822108 Eucalyptus grandis
Eucgr.D01730 2.0kb downstream 2.0kb downstream 2000 false Chr04: 30815412-30817411 Eucalyptus grandis
Eucgr.D01730 5.0kb upstream 5.0kb upstream 9697 true Chr04: 30817412-30827108 Eucalyptus grandis
Eucgr.D01730 5.0kb upstream 5.0kb upstream 5000 false Chr04: 30822109-30827108 Eucalyptus grandis
Eucgr.D01730 5.0kb downstream 5.0kb downstream 9697 true Chr04: 30812412-30822108 Eucalyptus grandis
Eucgr.D01730 5.0kb downstream 5.0kb downstream 5000 false Chr04: 30812412-30817411 Eucalyptus grandis
Eucgr.D01730 10.0kb upstream 10.0kb upstream 14697 true Chr04: 30817412-30832108 Eucalyptus grandis
Eucgr.D01730 10.0kb upstream 10.0kb upstream 10000 false Chr04: 30822109-30832108 Eucalyptus grandis
Eucgr.D01730 10.0kb downstream 10.0kb downstream 14697 true Chr04: 30807412-30822108 Eucalyptus grandis
Eucgr.D01730 10.0kb downstream 10.0kb downstream 10000 false Chr04: 30807412-30817411 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068790 5270 Rosid View MSA
123750748 5271 Pentapetalae View MSA
122786730 5272 Eudicot View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.686407 0.0 16.19   Low
cufflinks 6.07693 0.0 94.3333    
cufflinks 0.810717 0.0 17.1867   Low
cufflinks 3.43731 0.0 74.6731    
cufflinks 7.65452 0.0 46.3245    
cufflinks 5.0804 0.0 63.6095    

0 Strain