Gene : Eucgr.D02140 E. grandis v2.0
Defline:  (1 of 1) KOG0231 - Junctional membrane complex protein Junctophilin and related MORN repeat proteins Genomic Order:  1761
Name:  ? Eucgr.D02140 Secondary Identifier:  ? PAC:32051260
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6351 Eucalyptus grandis pathologic  
Egrandis PWY-6352 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02140 0.5kb upstream 0.5kb upstream 3716 true Chr04: 34831342-34835057 Eucalyptus grandis
Eucgr.D02140 0.5kb upstream 0.5kb upstream 500 false Chr04: 34831342-34831841 Eucalyptus grandis
Eucgr.D02140 0.5kb downstream 0.5kb downstream 3716 true Chr04: 34831842-34835557 Eucalyptus grandis
Eucgr.D02140 0.5kb downstream 0.5kb downstream 500 false Chr04: 34835058-34835557 Eucalyptus grandis
Eucgr.D02140 1.0kb upstream 1.0kb upstream 4216 true Chr04: 34830842-34835057 Eucalyptus grandis
Eucgr.D02140 1.0kb upstream 1.0kb upstream 1000 false Chr04: 34830842-34831841 Eucalyptus grandis
Eucgr.D02140 1.0kb downstream 1.0kb downstream 4216 true Chr04: 34831842-34836057 Eucalyptus grandis
Eucgr.D02140 1.0kb downstream 1.0kb downstream 1000 false Chr04: 34835058-34836057 Eucalyptus grandis
Eucgr.D02140 2.0kb upstream 2.0kb upstream 5216 true Chr04: 34829842-34835057 Eucalyptus grandis
Eucgr.D02140 2.0kb upstream 2.0kb upstream 2000 false Chr04: 34829842-34831841 Eucalyptus grandis
Eucgr.D02140 2.0kb downstream 2.0kb downstream 5216 true Chr04: 34831842-34837057 Eucalyptus grandis
Eucgr.D02140 2.0kb downstream 2.0kb downstream 2000 false Chr04: 34835058-34837057 Eucalyptus grandis
Eucgr.D02140 5.0kb upstream 5.0kb upstream 8216 true Chr04: 34826842-34835057 Eucalyptus grandis
Eucgr.D02140 5.0kb upstream 5.0kb upstream 5000 false Chr04: 34826842-34831841 Eucalyptus grandis
Eucgr.D02140 5.0kb downstream 5.0kb downstream 8216 true Chr04: 34831842-34840057 Eucalyptus grandis
Eucgr.D02140 5.0kb downstream 5.0kb downstream 5000 false Chr04: 34835058-34840057 Eucalyptus grandis
Eucgr.D02140 10.0kb upstream 10.0kb upstream 13216 true Chr04: 34821842-34835057 Eucalyptus grandis
Eucgr.D02140 10.0kb upstream 10.0kb upstream 10000 false Chr04: 34821842-34831841 Eucalyptus grandis
Eucgr.D02140 10.0kb downstream 10.0kb downstream 13216 true Chr04: 34831842-34845057 Eucalyptus grandis
Eucgr.D02140 10.0kb downstream 10.0kb downstream 10000 false Chr04: 34835058-34845057 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068935 5270 Rosid View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5528 0.0 28.9148   High
cufflinks 6.24559 0.0 14.6703    
cufflinks 7.41049 0.0 17.1215    
cufflinks 5.01749 0.0 13.4292    
cufflinks 2.43543 0.0 6.49733   Low
cufflinks 10.1978 0.0 23.8186    

0 Strain