Gene : Eucgr.D02465 E. grandis v2.0
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  2052
Name:  ? Eucgr.D02465 Secondary Identifier:  ? PAC:32051134
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02465 0.5kb upstream 0.5kb upstream 6039 true Chr04: 38418255-38424293 Eucalyptus grandis
Eucgr.D02465 0.5kb upstream 0.5kb upstream 500 false Chr04: 38423794-38424293 Eucalyptus grandis
Eucgr.D02465 0.5kb downstream 0.5kb downstream 6039 true Chr04: 38417755-38423793 Eucalyptus grandis
Eucgr.D02465 0.5kb downstream 0.5kb downstream 500 false Chr04: 38417755-38418254 Eucalyptus grandis
Eucgr.D02465 1.0kb upstream 1.0kb upstream 6539 true Chr04: 38418255-38424793 Eucalyptus grandis
Eucgr.D02465 1.0kb upstream 1.0kb upstream 1000 false Chr04: 38423794-38424793 Eucalyptus grandis
Eucgr.D02465 1.0kb downstream 1.0kb downstream 6539 true Chr04: 38417255-38423793 Eucalyptus grandis
Eucgr.D02465 1.0kb downstream 1.0kb downstream 1000 false Chr04: 38417255-38418254 Eucalyptus grandis
Eucgr.D02465 2.0kb upstream 2.0kb upstream 7539 true Chr04: 38418255-38425793 Eucalyptus grandis
Eucgr.D02465 2.0kb upstream 2.0kb upstream 2000 false Chr04: 38423794-38425793 Eucalyptus grandis
Eucgr.D02465 2.0kb downstream 2.0kb downstream 7539 true Chr04: 38416255-38423793 Eucalyptus grandis
Eucgr.D02465 2.0kb downstream 2.0kb downstream 2000 false Chr04: 38416255-38418254 Eucalyptus grandis
Eucgr.D02465 5.0kb upstream 5.0kb upstream 10539 true Chr04: 38418255-38428793 Eucalyptus grandis
Eucgr.D02465 5.0kb upstream 5.0kb upstream 5000 false Chr04: 38423794-38428793 Eucalyptus grandis
Eucgr.D02465 5.0kb downstream 5.0kb downstream 10539 true Chr04: 38413255-38423793 Eucalyptus grandis
Eucgr.D02465 5.0kb downstream 5.0kb downstream 5000 false Chr04: 38413255-38418254 Eucalyptus grandis
Eucgr.D02465 10.0kb upstream 10.0kb upstream 15539 true Chr04: 38418255-38433793 Eucalyptus grandis
Eucgr.D02465 10.0kb upstream 10.0kb upstream 10000 false Chr04: 38423794-38433793 Eucalyptus grandis
Eucgr.D02465 10.0kb downstream 10.0kb downstream 15539 true Chr04: 38408255-38423793 Eucalyptus grandis
Eucgr.D02465 10.0kb downstream 10.0kb downstream 10000 false Chr04: 38408255-38418254 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.5132 0.0 68.2904    
cufflinks 191.925 0.0 549.096 High High
cufflinks 17.997 0.0 58.7845    
cufflinks 113.602 0.0 287.857 High  
cufflinks 28.3938 0.0 65.378    
cufflinks 30.2942 0.0 69.8834    

0 Strain