Gene : Eucgr.D02318 E. grandis v2.0
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  1920
Name:  ? Eucgr.D02318 Secondary Identifier:  ? PAC:32050188
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7039 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02318 0.5kb upstream 0.5kb upstream 4549 true Chr04: 36449579-36454127 Eucalyptus grandis
Eucgr.D02318 0.5kb upstream 0.5kb upstream 500 false Chr04: 36453628-36454127 Eucalyptus grandis
Eucgr.D02318 0.5kb downstream 0.5kb downstream 4549 true Chr04: 36449079-36453627 Eucalyptus grandis
Eucgr.D02318 0.5kb downstream 0.5kb downstream 500 false Chr04: 36449079-36449578 Eucalyptus grandis
Eucgr.D02318 1.0kb upstream 1.0kb upstream 5049 true Chr04: 36449579-36454627 Eucalyptus grandis
Eucgr.D02318 1.0kb upstream 1.0kb upstream 1000 false Chr04: 36453628-36454627 Eucalyptus grandis
Eucgr.D02318 1.0kb downstream 1.0kb downstream 5049 true Chr04: 36448579-36453627 Eucalyptus grandis
Eucgr.D02318 1.0kb downstream 1.0kb downstream 1000 false Chr04: 36448579-36449578 Eucalyptus grandis
Eucgr.D02318 2.0kb upstream 2.0kb upstream 6049 true Chr04: 36449579-36455627 Eucalyptus grandis
Eucgr.D02318 2.0kb upstream 2.0kb upstream 2000 false Chr04: 36453628-36455627 Eucalyptus grandis
Eucgr.D02318 2.0kb downstream 2.0kb downstream 6049 true Chr04: 36447579-36453627 Eucalyptus grandis
Eucgr.D02318 2.0kb downstream 2.0kb downstream 2000 false Chr04: 36447579-36449578 Eucalyptus grandis
Eucgr.D02318 5.0kb upstream 5.0kb upstream 9049 true Chr04: 36449579-36458627 Eucalyptus grandis
Eucgr.D02318 5.0kb upstream 5.0kb upstream 5000 false Chr04: 36453628-36458627 Eucalyptus grandis
Eucgr.D02318 5.0kb downstream 5.0kb downstream 9049 true Chr04: 36444579-36453627 Eucalyptus grandis
Eucgr.D02318 5.0kb downstream 5.0kb downstream 5000 false Chr04: 36444579-36449578 Eucalyptus grandis
Eucgr.D02318 10.0kb upstream 10.0kb upstream 14049 true Chr04: 36449579-36463627 Eucalyptus grandis
Eucgr.D02318 10.0kb upstream 10.0kb upstream 10000 false Chr04: 36453628-36463627 Eucalyptus grandis
Eucgr.D02318 10.0kb downstream 10.0kb downstream 14049 true Chr04: 36439579-36453627 Eucalyptus grandis
Eucgr.D02318 10.0kb downstream 10.0kb downstream 10000 false Chr04: 36439579-36449578 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.03777 0.0 26.2829   High
cufflinks 6.5875 0.0 18.9581    
cufflinks 8.39567 0.0 21.6495    
cufflinks 6.88636 0.0 19.4531    
cufflinks 4.45874 0.0 13.36   Low
cufflinks 5.52295 0.0 21.1449    

0 Strain