Gene : Eucgr.E00029 E. grandis v2.0
Defline:  (1 of 3) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  27
Name:  ? Eucgr.E00029 Secondary Identifier:  ? PAC:32029152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00029 0.5kb upstream 0.5kb upstream 5723 true Chr05: 327836-333558 Eucalyptus grandis
Eucgr.E00029 0.5kb upstream 0.5kb upstream 500 false Chr05: 333059-333558 Eucalyptus grandis
Eucgr.E00029 0.5kb downstream 0.5kb downstream 5723 true Chr05: 327336-333058 Eucalyptus grandis
Eucgr.E00029 0.5kb downstream 0.5kb downstream 500 false Chr05: 327336-327835 Eucalyptus grandis
Eucgr.E00029 1.0kb upstream 1.0kb upstream 6223 true Chr05: 327836-334058 Eucalyptus grandis
Eucgr.E00029 1.0kb upstream 1.0kb upstream 1000 false Chr05: 333059-334058 Eucalyptus grandis
Eucgr.E00029 1.0kb downstream 1.0kb downstream 6223 true Chr05: 326836-333058 Eucalyptus grandis
Eucgr.E00029 1.0kb downstream 1.0kb downstream 1000 false Chr05: 326836-327835 Eucalyptus grandis
Eucgr.E00029 2.0kb upstream 2.0kb upstream 7223 true Chr05: 327836-335058 Eucalyptus grandis
Eucgr.E00029 2.0kb upstream 2.0kb upstream 2000 false Chr05: 333059-335058 Eucalyptus grandis
Eucgr.E00029 2.0kb downstream 2.0kb downstream 7223 true Chr05: 325836-333058 Eucalyptus grandis
Eucgr.E00029 2.0kb downstream 2.0kb downstream 2000 false Chr05: 325836-327835 Eucalyptus grandis
Eucgr.E00029 5.0kb upstream 5.0kb upstream 10223 true Chr05: 327836-338058 Eucalyptus grandis
Eucgr.E00029 5.0kb upstream 5.0kb upstream 5000 false Chr05: 333059-338058 Eucalyptus grandis
Eucgr.E00029 5.0kb downstream 5.0kb downstream 10223 true Chr05: 322836-333058 Eucalyptus grandis
Eucgr.E00029 5.0kb downstream 5.0kb downstream 5000 false Chr05: 322836-327835 Eucalyptus grandis
Eucgr.E00029 10.0kb upstream 10.0kb upstream 15223 true Chr05: 327836-343058 Eucalyptus grandis
Eucgr.E00029 10.0kb upstream 10.0kb upstream 10000 false Chr05: 333059-343058 Eucalyptus grandis
Eucgr.E00029 10.0kb downstream 10.0kb downstream 15223 true Chr05: 317836-333058 Eucalyptus grandis
Eucgr.E00029 10.0kb downstream 10.0kb downstream 10000 false Chr05: 317836-327835 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.40775 0.0 21.0603    
cufflinks 4.27443 0.0 9.83139   Low
cufflinks 8.33215 0.0 18.8406    
cufflinks 12.8625 0.0 33.0941    
cufflinks 19.7261 0.0 45.5037   High
cufflinks 7.1355 0.0 16.5101    

0 Strain