Gene : Eucgr.E00780 E. grandis v2.0
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  658
Name:  ? Eucgr.E00780 Secondary Identifier:  ? PAC:32031099
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7560 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00780 0.5kb upstream 0.5kb upstream 3450 true Chr05: 8121416-8124865 Eucalyptus grandis
Eucgr.E00780 0.5kb upstream 0.5kb upstream 500 false Chr05: 8124366-8124865 Eucalyptus grandis
Eucgr.E00780 0.5kb downstream 0.5kb downstream 3450 true Chr05: 8120916-8124365 Eucalyptus grandis
Eucgr.E00780 0.5kb downstream 0.5kb downstream 500 false Chr05: 8120916-8121415 Eucalyptus grandis
Eucgr.E00780 1.0kb upstream 1.0kb upstream 3950 true Chr05: 8121416-8125365 Eucalyptus grandis
Eucgr.E00780 1.0kb upstream 1.0kb upstream 1000 false Chr05: 8124366-8125365 Eucalyptus grandis
Eucgr.E00780 1.0kb downstream 1.0kb downstream 3950 true Chr05: 8120416-8124365 Eucalyptus grandis
Eucgr.E00780 1.0kb downstream 1.0kb downstream 1000 false Chr05: 8120416-8121415 Eucalyptus grandis
Eucgr.E00780 2.0kb upstream 2.0kb upstream 4950 true Chr05: 8121416-8126365 Eucalyptus grandis
Eucgr.E00780 2.0kb upstream 2.0kb upstream 2000 false Chr05: 8124366-8126365 Eucalyptus grandis
Eucgr.E00780 2.0kb downstream 2.0kb downstream 4950 true Chr05: 8119416-8124365 Eucalyptus grandis
Eucgr.E00780 2.0kb downstream 2.0kb downstream 2000 false Chr05: 8119416-8121415 Eucalyptus grandis
Eucgr.E00780 5.0kb upstream 5.0kb upstream 7950 true Chr05: 8121416-8129365 Eucalyptus grandis
Eucgr.E00780 5.0kb upstream 5.0kb upstream 5000 false Chr05: 8124366-8129365 Eucalyptus grandis
Eucgr.E00780 5.0kb downstream 5.0kb downstream 7950 true Chr05: 8116416-8124365 Eucalyptus grandis
Eucgr.E00780 5.0kb downstream 5.0kb downstream 5000 false Chr05: 8116416-8121415 Eucalyptus grandis
Eucgr.E00780 10.0kb upstream 10.0kb upstream 12950 true Chr05: 8121416-8134365 Eucalyptus grandis
Eucgr.E00780 10.0kb upstream 10.0kb upstream 10000 false Chr05: 8124366-8134365 Eucalyptus grandis
Eucgr.E00780 10.0kb downstream 10.0kb downstream 12950 true Chr05: 8111416-8124365 Eucalyptus grandis
Eucgr.E00780 10.0kb downstream 10.0kb downstream 10000 false Chr05: 8111416-8121415 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9723 0.0 44.4518    
cufflinks 1.5755 0.0 4.33248    
cufflinks 15.0908 0.0 33.953    
cufflinks 2.39713 0.0 6.33847    
cufflinks 0.554826 0.0 1.71611 Low Low
cufflinks 14.7077 0.0 33.1112    

0 Strain