Gene : Eucgr.E00582 E. grandis v2.0
Defline:  (1 of 2) PTHR33317:SF1 - POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN Genomic Order:  518
Name:  ? Eucgr.E00582 Secondary Identifier:  ? PAC:32031381
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E00582 0.5kb upstream 0.5kb upstream 4703 true Chr05: 5546701-5551403 Eucalyptus grandis
Eucgr.E00582 0.5kb upstream 0.5kb upstream 500 false Chr05: 5550904-5551403 Eucalyptus grandis
Eucgr.E00582 0.5kb downstream 0.5kb downstream 4703 true Chr05: 5546201-5550903 Eucalyptus grandis
Eucgr.E00582 0.5kb downstream 0.5kb downstream 500 false Chr05: 5546201-5546700 Eucalyptus grandis
Eucgr.E00582 1.0kb upstream 1.0kb upstream 5203 true Chr05: 5546701-5551903 Eucalyptus grandis
Eucgr.E00582 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5550904-5551903 Eucalyptus grandis
Eucgr.E00582 1.0kb downstream 1.0kb downstream 5203 true Chr05: 5545701-5550903 Eucalyptus grandis
Eucgr.E00582 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5545701-5546700 Eucalyptus grandis
Eucgr.E00582 2.0kb upstream 2.0kb upstream 6203 true Chr05: 5546701-5552903 Eucalyptus grandis
Eucgr.E00582 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5550904-5552903 Eucalyptus grandis
Eucgr.E00582 2.0kb downstream 2.0kb downstream 6203 true Chr05: 5544701-5550903 Eucalyptus grandis
Eucgr.E00582 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5544701-5546700 Eucalyptus grandis
Eucgr.E00582 5.0kb upstream 5.0kb upstream 9203 true Chr05: 5546701-5555903 Eucalyptus grandis
Eucgr.E00582 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5550904-5555903 Eucalyptus grandis
Eucgr.E00582 5.0kb downstream 5.0kb downstream 9203 true Chr05: 5541701-5550903 Eucalyptus grandis
Eucgr.E00582 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5541701-5546700 Eucalyptus grandis
Eucgr.E00582 10.0kb upstream 10.0kb upstream 14203 true Chr05: 5546701-5560903 Eucalyptus grandis
Eucgr.E00582 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5550904-5560903 Eucalyptus grandis
Eucgr.E00582 10.0kb downstream 10.0kb downstream 14203 true Chr05: 5536701-5550903 Eucalyptus grandis
Eucgr.E00582 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5536701-5546700 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067279 5270 Rosid View MSA
123746369 5271 Pentapetalae View MSA
122785614 5272 Eudicot View MSA
122048036 5273 Angiosperm View MSA
121349861 5274 Embryophyte View MSA
123381473 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.5829 0.0 16.7321    
cufflinks 2.44088 0.0 7.54246   Low
cufflinks 7.05214 0.0 23.8132   High
cufflinks 4.31188 0.0 11.6703    
cufflinks 4.69276 0.0 16.4776    
cufflinks 5.10084 0.0 13.7667    

0 Strain