Gene : Eucgr.E01312 E. grandis v2.0
Defline:  (1 of 3) PF00288//PF08544 - GHMP kinases N terminal domain (GHMP_kinases_N) // GHMP kinases C terminal (GHMP_kinases_C) Genomic Order:  1029
Name:  ? Eucgr.E01312 Secondary Identifier:  ? PAC:32030979
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5910 Eucalyptus grandis pathologic  
Egrandis PWY-922 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E01312 0.5kb upstream 0.5kb upstream 7620 true Chr05: 13719202-13726821 Eucalyptus grandis
Eucgr.E01312 0.5kb upstream 0.5kb upstream 500 false Chr05: 13726322-13726821 Eucalyptus grandis
Eucgr.E01312 0.5kb downstream 0.5kb downstream 7620 true Chr05: 13718702-13726321 Eucalyptus grandis
Eucgr.E01312 0.5kb downstream 0.5kb downstream 500 false Chr05: 13718702-13719201 Eucalyptus grandis
Eucgr.E01312 1.0kb upstream 1.0kb upstream 8120 true Chr05: 13719202-13727321 Eucalyptus grandis
Eucgr.E01312 1.0kb upstream 1.0kb upstream 1000 false Chr05: 13726322-13727321 Eucalyptus grandis
Eucgr.E01312 1.0kb downstream 1.0kb downstream 8120 true Chr05: 13718202-13726321 Eucalyptus grandis
Eucgr.E01312 1.0kb downstream 1.0kb downstream 1000 false Chr05: 13718202-13719201 Eucalyptus grandis
Eucgr.E01312 2.0kb upstream 2.0kb upstream 9120 true Chr05: 13719202-13728321 Eucalyptus grandis
Eucgr.E01312 2.0kb upstream 2.0kb upstream 2000 false Chr05: 13726322-13728321 Eucalyptus grandis
Eucgr.E01312 2.0kb downstream 2.0kb downstream 9120 true Chr05: 13717202-13726321 Eucalyptus grandis
Eucgr.E01312 2.0kb downstream 2.0kb downstream 2000 false Chr05: 13717202-13719201 Eucalyptus grandis
Eucgr.E01312 5.0kb upstream 5.0kb upstream 12120 true Chr05: 13719202-13731321 Eucalyptus grandis
Eucgr.E01312 5.0kb upstream 5.0kb upstream 5000 false Chr05: 13726322-13731321 Eucalyptus grandis
Eucgr.E01312 5.0kb downstream 5.0kb downstream 12120 true Chr05: 13714202-13726321 Eucalyptus grandis
Eucgr.E01312 5.0kb downstream 5.0kb downstream 5000 false Chr05: 13714202-13719201 Eucalyptus grandis
Eucgr.E01312 10.0kb upstream 10.0kb upstream 17120 true Chr05: 13719202-13736321 Eucalyptus grandis
Eucgr.E01312 10.0kb upstream 10.0kb upstream 10000 false Chr05: 13726322-13736321 Eucalyptus grandis
Eucgr.E01312 10.0kb downstream 10.0kb downstream 17120 true Chr05: 13709202-13726321 Eucalyptus grandis
Eucgr.E01312 10.0kb downstream 10.0kb downstream 10000 false Chr05: 13709202-13719201 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060690 5270 Rosid View MSA
123748529 5271 Pentapetalae View MSA
122787383 5272 Eudicot View MSA
122043495 5273 Angiosperm View MSA
121345412 5274 Embryophyte View MSA
123380212 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.12885 0.0 20.3958   Low
cufflinks 13.4895 0.0 30.4745    
cufflinks 15.2887 0.0 34.5425    
cufflinks 11.0724 0.0 25.44    
cufflinks 8.41235 0.0 20.1408   Low
cufflinks 15.2049 0.0 42.3545    

0 Strain