Gene : Eucgr.E01071 E. grandis v2.0
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  842
Name:  ? Eucgr.E01071 Secondary Identifier:  ? PAC:32030630
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5173 Eucalyptus grandis pathologic  
Egrandis PWY-5464 Eucalyptus grandis pathologic  
Egrandis PYRUVDEHYD-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E01071 0.5kb upstream 0.5kb upstream 4593 true Chr05: 10386894-10391486 Eucalyptus grandis
Eucgr.E01071 0.5kb upstream 0.5kb upstream 500 false Chr05: 10386894-10387393 Eucalyptus grandis
Eucgr.E01071 0.5kb downstream 0.5kb downstream 4593 true Chr05: 10387394-10391986 Eucalyptus grandis
Eucgr.E01071 0.5kb downstream 0.5kb downstream 500 false Chr05: 10391487-10391986 Eucalyptus grandis
Eucgr.E01071 1.0kb upstream 1.0kb upstream 5093 true Chr05: 10386394-10391486 Eucalyptus grandis
Eucgr.E01071 1.0kb upstream 1.0kb upstream 1000 false Chr05: 10386394-10387393 Eucalyptus grandis
Eucgr.E01071 1.0kb downstream 1.0kb downstream 5093 true Chr05: 10387394-10392486 Eucalyptus grandis
Eucgr.E01071 1.0kb downstream 1.0kb downstream 1000 false Chr05: 10391487-10392486 Eucalyptus grandis
Eucgr.E01071 2.0kb upstream 2.0kb upstream 6093 true Chr05: 10385394-10391486 Eucalyptus grandis
Eucgr.E01071 2.0kb upstream 2.0kb upstream 2000 false Chr05: 10385394-10387393 Eucalyptus grandis
Eucgr.E01071 2.0kb downstream 2.0kb downstream 6093 true Chr05: 10387394-10393486 Eucalyptus grandis
Eucgr.E01071 2.0kb downstream 2.0kb downstream 2000 false Chr05: 10391487-10393486 Eucalyptus grandis
Eucgr.E01071 5.0kb upstream 5.0kb upstream 9093 true Chr05: 10382394-10391486 Eucalyptus grandis
Eucgr.E01071 5.0kb upstream 5.0kb upstream 5000 false Chr05: 10382394-10387393 Eucalyptus grandis
Eucgr.E01071 5.0kb downstream 5.0kb downstream 9093 true Chr05: 10387394-10396486 Eucalyptus grandis
Eucgr.E01071 5.0kb downstream 5.0kb downstream 5000 false Chr05: 10391487-10396486 Eucalyptus grandis
Eucgr.E01071 10.0kb upstream 10.0kb upstream 14093 true Chr05: 10377394-10391486 Eucalyptus grandis
Eucgr.E01071 10.0kb upstream 10.0kb upstream 10000 false Chr05: 10377394-10387393 Eucalyptus grandis
Eucgr.E01071 10.0kb downstream 10.0kb downstream 14093 true Chr05: 10387394-10401486 Eucalyptus grandis
Eucgr.E01071 10.0kb downstream 10.0kb downstream 10000 false Chr05: 10391487-10401486 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124043342 5270 Rosid Singleton cluster - no MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.6496 0.0 52.3421    
cufflinks 13.2233 0.0 29.7871    
cufflinks 26.4996 0.0 58.6118 High  
cufflinks 19.1142 0.0 42.4729    
cufflinks 9.52625 0.0 21.898   Low
cufflinks 42.5176 0.0 94.6315 High High

0 Strain