Gene : Eucgr.E03123 E. grandis v2.0
Defline:  (1 of 2) PTHR13152 - TFIIH, POLYPEPTIDE 4 Genomic Order:  2442
Name:  ? Eucgr.E03123 Secondary Identifier:  ? PAC:32031987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03123 0.5kb upstream 0.5kb upstream 9229 true Chr05: 55911437-55920665 Eucalyptus grandis
Eucgr.E03123 0.5kb upstream 0.5kb upstream 500 false Chr05: 55920166-55920665 Eucalyptus grandis
Eucgr.E03123 0.5kb downstream 0.5kb downstream 9229 true Chr05: 55910937-55920165 Eucalyptus grandis
Eucgr.E03123 0.5kb downstream 0.5kb downstream 500 false Chr05: 55910937-55911436 Eucalyptus grandis
Eucgr.E03123 1.0kb upstream 1.0kb upstream 9729 true Chr05: 55911437-55921165 Eucalyptus grandis
Eucgr.E03123 1.0kb upstream 1.0kb upstream 1000 false Chr05: 55920166-55921165 Eucalyptus grandis
Eucgr.E03123 1.0kb downstream 1.0kb downstream 9729 true Chr05: 55910437-55920165 Eucalyptus grandis
Eucgr.E03123 1.0kb downstream 1.0kb downstream 1000 false Chr05: 55910437-55911436 Eucalyptus grandis
Eucgr.E03123 2.0kb upstream 2.0kb upstream 10729 true Chr05: 55911437-55922165 Eucalyptus grandis
Eucgr.E03123 2.0kb upstream 2.0kb upstream 2000 false Chr05: 55920166-55922165 Eucalyptus grandis
Eucgr.E03123 2.0kb downstream 2.0kb downstream 10729 true Chr05: 55909437-55920165 Eucalyptus grandis
Eucgr.E03123 2.0kb downstream 2.0kb downstream 2000 false Chr05: 55909437-55911436 Eucalyptus grandis
Eucgr.E03123 5.0kb upstream 5.0kb upstream 13729 true Chr05: 55911437-55925165 Eucalyptus grandis
Eucgr.E03123 5.0kb upstream 5.0kb upstream 5000 false Chr05: 55920166-55925165 Eucalyptus grandis
Eucgr.E03123 5.0kb downstream 5.0kb downstream 13729 true Chr05: 55906437-55920165 Eucalyptus grandis
Eucgr.E03123 5.0kb downstream 5.0kb downstream 5000 false Chr05: 55906437-55911436 Eucalyptus grandis
Eucgr.E03123 10.0kb upstream 10.0kb upstream 18729 true Chr05: 55911437-55930165 Eucalyptus grandis
Eucgr.E03123 10.0kb upstream 10.0kb upstream 10000 false Chr05: 55920166-55930165 Eucalyptus grandis
Eucgr.E03123 10.0kb downstream 10.0kb downstream 18729 true Chr05: 55901437-55920165 Eucalyptus grandis
Eucgr.E03123 10.0kb downstream 10.0kb downstream 10000 false Chr05: 55901437-55911436 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050287 5270 Rosid View MSA
123747685 5271 Pentapetalae View MSA
122797891 5272 Eudicot View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.90797 0.0 8.94151   Low
cufflinks 5.41898 0.0 15.4754    
cufflinks 4.07349 0.0 12.0579    
cufflinks 4.47263 0.0 10.8398    
cufflinks 3.26472 0.0 8.36001    
cufflinks 7.29512 0.0 17.0502   High

0 Strain