Gene : Eucgr.E03142 E. grandis v2.0
Defline:  (1 of 3) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2434
Name:  ? Eucgr.E03142 Secondary Identifier:  ? PAC:32031629
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03142 0.5kb upstream 0.5kb upstream 2020 true Chr05: 55500099-55502118 Eucalyptus grandis
Eucgr.E03142 0.5kb upstream 0.5kb upstream 500 false Chr05: 55500099-55500598 Eucalyptus grandis
Eucgr.E03142 0.5kb downstream 0.5kb downstream 2020 true Chr05: 55500599-55502618 Eucalyptus grandis
Eucgr.E03142 0.5kb downstream 0.5kb downstream 500 false Chr05: 55502119-55502618 Eucalyptus grandis
Eucgr.E03142 1.0kb upstream 1.0kb upstream 2520 true Chr05: 55499599-55502118 Eucalyptus grandis
Eucgr.E03142 1.0kb upstream 1.0kb upstream 1000 false Chr05: 55499599-55500598 Eucalyptus grandis
Eucgr.E03142 1.0kb downstream 1.0kb downstream 2520 true Chr05: 55500599-55503118 Eucalyptus grandis
Eucgr.E03142 1.0kb downstream 1.0kb downstream 1000 false Chr05: 55502119-55503118 Eucalyptus grandis
Eucgr.E03142 2.0kb upstream 2.0kb upstream 3520 true Chr05: 55498599-55502118 Eucalyptus grandis
Eucgr.E03142 2.0kb upstream 2.0kb upstream 2000 false Chr05: 55498599-55500598 Eucalyptus grandis
Eucgr.E03142 2.0kb downstream 2.0kb downstream 3520 true Chr05: 55500599-55504118 Eucalyptus grandis
Eucgr.E03142 2.0kb downstream 2.0kb downstream 2000 false Chr05: 55502119-55504118 Eucalyptus grandis
Eucgr.E03142 5.0kb upstream 5.0kb upstream 6520 true Chr05: 55495599-55502118 Eucalyptus grandis
Eucgr.E03142 5.0kb upstream 5.0kb upstream 5000 false Chr05: 55495599-55500598 Eucalyptus grandis
Eucgr.E03142 5.0kb downstream 5.0kb downstream 6520 true Chr05: 55500599-55507118 Eucalyptus grandis
Eucgr.E03142 5.0kb downstream 5.0kb downstream 5000 false Chr05: 55502119-55507118 Eucalyptus grandis
Eucgr.E03142 10.0kb upstream 10.0kb upstream 11520 true Chr05: 55490599-55502118 Eucalyptus grandis
Eucgr.E03142 10.0kb upstream 10.0kb upstream 10000 false Chr05: 55490599-55500598 Eucalyptus grandis
Eucgr.E03142 10.0kb downstream 10.0kb downstream 11520 true Chr05: 55500599-55512118 Eucalyptus grandis
Eucgr.E03142 10.0kb downstream 10.0kb downstream 10000 false Chr05: 55502119-55512118 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.19273E-4 0.0 0.0264144 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.162127 0.0 0.607419 Low  
cufflinks 0.308331 0.0 1.05015 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.97989 0.0 5.54183    

0 Strain