Gene : Eucgr.E03847 E. grandis v2.0
Defline:  (1 of 9) PTHR13301:SF60 - CELLULOSE SYNTHASE-LIKE PROTEIN E1 Genomic Order:  3136
Name:  ? Eucgr.E03847 Secondary Identifier:  ? PAC:32031850
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.E03847 0.5kb upstream 0.5kb upstream 3625 true Chr05: 73169245-73172869 Eucalyptus grandis
Eucgr.E03847 0.5kb upstream 0.5kb upstream 500 false Chr05: 73172370-73172869 Eucalyptus grandis
Eucgr.E03847 0.5kb downstream 0.5kb downstream 3625 true Chr05: 73168745-73172369 Eucalyptus grandis
Eucgr.E03847 0.5kb downstream 0.5kb downstream 500 false Chr05: 73168745-73169244 Eucalyptus grandis
Eucgr.E03847 1.0kb upstream 1.0kb upstream 4125 true Chr05: 73169245-73173369 Eucalyptus grandis
Eucgr.E03847 1.0kb upstream 1.0kb upstream 1000 false Chr05: 73172370-73173369 Eucalyptus grandis
Eucgr.E03847 1.0kb downstream 1.0kb downstream 4125 true Chr05: 73168245-73172369 Eucalyptus grandis
Eucgr.E03847 1.0kb downstream 1.0kb downstream 1000 false Chr05: 73168245-73169244 Eucalyptus grandis
Eucgr.E03847 2.0kb upstream 2.0kb upstream 5125 true Chr05: 73169245-73174369 Eucalyptus grandis
Eucgr.E03847 2.0kb upstream 2.0kb upstream 2000 false Chr05: 73172370-73174369 Eucalyptus grandis
Eucgr.E03847 2.0kb downstream 2.0kb downstream 5125 true Chr05: 73167245-73172369 Eucalyptus grandis
Eucgr.E03847 2.0kb downstream 2.0kb downstream 2000 false Chr05: 73167245-73169244 Eucalyptus grandis
Eucgr.E03847 5.0kb upstream 5.0kb upstream 8125 true Chr05: 73169245-73177369 Eucalyptus grandis
Eucgr.E03847 5.0kb upstream 5.0kb upstream 5000 false Chr05: 73172370-73177369 Eucalyptus grandis
Eucgr.E03847 5.0kb downstream 5.0kb downstream 8125 true Chr05: 73164245-73172369 Eucalyptus grandis
Eucgr.E03847 5.0kb downstream 5.0kb downstream 5000 false Chr05: 73164245-73169244 Eucalyptus grandis
Eucgr.E03847 10.0kb upstream 10.0kb upstream 13125 true Chr05: 73169245-73182369 Eucalyptus grandis
Eucgr.E03847 10.0kb upstream 10.0kb upstream 10000 false Chr05: 73172370-73182369 Eucalyptus grandis
Eucgr.E03847 10.0kb downstream 10.0kb downstream 13125 true Chr05: 73159245-73172369 Eucalyptus grandis
Eucgr.E03847 10.0kb downstream 10.0kb downstream 10000 false Chr05: 73159245-73169244 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.890117 0.0 2.9996    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.43733 0.0 4.50468    
cufflinks 0.028422 0.0 0.845221 Low Low
cufflinks 0.503654 0.0 2.03426 Low  
cufflinks 2.90894 0.0 8.09885    

0 Strain