Gene : Eucgr.A00484 E. grandis v2.0
Defline:  (1 of 33) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1797
Name:  ? Eucgr.A00484 Secondary Identifier:  ? PAC:32055737
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00484 0.5kb upstream 0.5kb upstream 2364 true Chr06: 29656473-29658836 Eucalyptus grandis
Eucgr.A00484 0.5kb upstream 0.5kb upstream 500 false Chr06: 29658337-29658836 Eucalyptus grandis
Eucgr.A00484 0.5kb downstream 0.5kb downstream 2364 true Chr06: 29655973-29658336 Eucalyptus grandis
Eucgr.A00484 0.5kb downstream 0.5kb downstream 500 false Chr06: 29655973-29656472 Eucalyptus grandis
Eucgr.A00484 1.0kb upstream 1.0kb upstream 2864 true Chr06: 29656473-29659336 Eucalyptus grandis
Eucgr.A00484 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29658337-29659336 Eucalyptus grandis
Eucgr.A00484 1.0kb downstream 1.0kb downstream 2864 true Chr06: 29655473-29658336 Eucalyptus grandis
Eucgr.A00484 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29655473-29656472 Eucalyptus grandis
Eucgr.A00484 2.0kb upstream 2.0kb upstream 3864 true Chr06: 29656473-29660336 Eucalyptus grandis
Eucgr.A00484 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29658337-29660336 Eucalyptus grandis
Eucgr.A00484 2.0kb downstream 2.0kb downstream 3864 true Chr06: 29654473-29658336 Eucalyptus grandis
Eucgr.A00484 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29654473-29656472 Eucalyptus grandis
Eucgr.A00484 5.0kb upstream 5.0kb upstream 6864 true Chr06: 29656473-29663336 Eucalyptus grandis
Eucgr.A00484 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29658337-29663336 Eucalyptus grandis
Eucgr.A00484 5.0kb downstream 5.0kb downstream 6864 true Chr06: 29651473-29658336 Eucalyptus grandis
Eucgr.A00484 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29651473-29656472 Eucalyptus grandis
Eucgr.A00484 10.0kb upstream 10.0kb upstream 11864 true Chr06: 29656473-29668336 Eucalyptus grandis
Eucgr.A00484 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29658337-29668336 Eucalyptus grandis
Eucgr.A00484 10.0kb downstream 10.0kb downstream 11864 true Chr06: 29646473-29658336 Eucalyptus grandis
Eucgr.A00484 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29646473-29656472 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124047163 5270 Rosid Singleton cluster - no MSA
123745749 5271 Pentapetalae View MSA
122788083 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.659964 0.0 1.95727    
cufflinks 1.62786 0.0 4.37845    
cufflinks 1.39536 0.0 3.80671    
cufflinks 1.04657 0.0 2.9264    
cufflinks 0.465284 0.0 1.43915 Low Low
cufflinks 1.38518 0.0 3.80605    

0 Strain