Gene : Eucgr.A00474 E. grandis v2.0
Defline:  (1 of 1) PTHR21569:SF2 - 30S RIBOSOMAL PROTEIN S9, CHLOROPLASTIC Genomic Order:  1807
Name:  ? Eucgr.A00474 Secondary Identifier:  ? PAC:32054741
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00474 0.5kb upstream 0.5kb upstream 3888 true Chr06: 29871558-29875445 Eucalyptus grandis
Eucgr.A00474 0.5kb upstream 0.5kb upstream 500 false Chr06: 29871558-29872057 Eucalyptus grandis
Eucgr.A00474 0.5kb downstream 0.5kb downstream 3888 true Chr06: 29872058-29875945 Eucalyptus grandis
Eucgr.A00474 0.5kb downstream 0.5kb downstream 500 false Chr06: 29875446-29875945 Eucalyptus grandis
Eucgr.A00474 1.0kb upstream 1.0kb upstream 4388 true Chr06: 29871058-29875445 Eucalyptus grandis
Eucgr.A00474 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29871058-29872057 Eucalyptus grandis
Eucgr.A00474 1.0kb downstream 1.0kb downstream 4388 true Chr06: 29872058-29876445 Eucalyptus grandis
Eucgr.A00474 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29875446-29876445 Eucalyptus grandis
Eucgr.A00474 2.0kb upstream 2.0kb upstream 5388 true Chr06: 29870058-29875445 Eucalyptus grandis
Eucgr.A00474 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29870058-29872057 Eucalyptus grandis
Eucgr.A00474 2.0kb downstream 2.0kb downstream 5388 true Chr06: 29872058-29877445 Eucalyptus grandis
Eucgr.A00474 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29875446-29877445 Eucalyptus grandis
Eucgr.A00474 5.0kb upstream 5.0kb upstream 8388 true Chr06: 29867058-29875445 Eucalyptus grandis
Eucgr.A00474 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29867058-29872057 Eucalyptus grandis
Eucgr.A00474 5.0kb downstream 5.0kb downstream 8388 true Chr06: 29872058-29880445 Eucalyptus grandis
Eucgr.A00474 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29875446-29880445 Eucalyptus grandis
Eucgr.A00474 10.0kb upstream 10.0kb upstream 13388 true Chr06: 29862058-29875445 Eucalyptus grandis
Eucgr.A00474 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29862058-29872057 Eucalyptus grandis
Eucgr.A00474 10.0kb downstream 10.0kb downstream 13388 true Chr06: 29872058-29885445 Eucalyptus grandis
Eucgr.A00474 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29875446-29885445 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063747 5270 Rosid View MSA
123737620 5271 Pentapetalae View MSA
122790532 5272 Eudicot View MSA
122043582 5273 Angiosperm View MSA
121345989 5274 Embryophyte View MSA
123426879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.5174 0.0 48.0633    
cufflinks 1.13615 0.0 4.37771   Low
cufflinks 13.0097 0.0 32.4835    
cufflinks 2.23839 0.0 7.3656    
cufflinks 3.65254 0.0 11.1028    
cufflinks 50.3665 0.0 113.135 High High

0 Strain