Gene : Eucgr.F00108 E. grandis v2.0
Defline:  (1 of 12) PF02018 - Carbohydrate binding domain (CBM_4_9) Genomic Order:  209
Name:  ? Eucgr.F00108 Secondary Identifier:  ? PAC:32055469
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F00108 0.5kb upstream 0.5kb upstream 5896 true Chr06: 3645083-3650978 Eucalyptus grandis
Eucgr.F00108 0.5kb upstream 0.5kb upstream 500 false Chr06: 3645083-3645582 Eucalyptus grandis
Eucgr.F00108 0.5kb downstream 0.5kb downstream 5896 true Chr06: 3645583-3651478 Eucalyptus grandis
Eucgr.F00108 0.5kb downstream 0.5kb downstream 500 false Chr06: 3650979-3651478 Eucalyptus grandis
Eucgr.F00108 1.0kb upstream 1.0kb upstream 6396 true Chr06: 3644583-3650978 Eucalyptus grandis
Eucgr.F00108 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3644583-3645582 Eucalyptus grandis
Eucgr.F00108 1.0kb downstream 1.0kb downstream 6396 true Chr06: 3645583-3651978 Eucalyptus grandis
Eucgr.F00108 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3650979-3651978 Eucalyptus grandis
Eucgr.F00108 2.0kb upstream 2.0kb upstream 7396 true Chr06: 3643583-3650978 Eucalyptus grandis
Eucgr.F00108 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3643583-3645582 Eucalyptus grandis
Eucgr.F00108 2.0kb downstream 2.0kb downstream 7396 true Chr06: 3645583-3652978 Eucalyptus grandis
Eucgr.F00108 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3650979-3652978 Eucalyptus grandis
Eucgr.F00108 5.0kb upstream 5.0kb upstream 10396 true Chr06: 3640583-3650978 Eucalyptus grandis
Eucgr.F00108 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3640583-3645582 Eucalyptus grandis
Eucgr.F00108 5.0kb downstream 5.0kb downstream 10396 true Chr06: 3645583-3655978 Eucalyptus grandis
Eucgr.F00108 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3650979-3655978 Eucalyptus grandis
Eucgr.F00108 10.0kb upstream 10.0kb upstream 15396 true Chr06: 3635583-3650978 Eucalyptus grandis
Eucgr.F00108 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3635583-3645582 Eucalyptus grandis
Eucgr.F00108 10.0kb downstream 10.0kb downstream 15396 true Chr06: 3645583-3660978 Eucalyptus grandis
Eucgr.F00108 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3650979-3660978 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066828 5270 Rosid View MSA
123742236 5271 Pentapetalae View MSA
122786340 5272 Eudicot View MSA
122047511 5273 Angiosperm View MSA
121347321 5274 Embryophyte View MSA
123426707 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.33767 0.0 7.11129    
cufflinks 241.186 0.0 800.254 High High
cufflinks 2.02227 0.0 6.1469    
cufflinks 63.0991 0.0 174.72 High  
cufflinks 9.65141 0.0 25.6232    
cufflinks 5.03359 0.0 13.1448    

0 Strain