Gene : Eucgr.F01165 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1019
Name:  ? Eucgr.F01165 Secondary Identifier:  ? PAC:32056918
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01165 0.5kb upstream 0.5kb upstream 2336 true Chr06: 15870696-15873031 Eucalyptus grandis
Eucgr.F01165 0.5kb upstream 0.5kb upstream 500 false Chr06: 15870696-15871195 Eucalyptus grandis
Eucgr.F01165 0.5kb downstream 0.5kb downstream 2336 true Chr06: 15871196-15873531 Eucalyptus grandis
Eucgr.F01165 0.5kb downstream 0.5kb downstream 500 false Chr06: 15873032-15873531 Eucalyptus grandis
Eucgr.F01165 1.0kb upstream 1.0kb upstream 2836 true Chr06: 15870196-15873031 Eucalyptus grandis
Eucgr.F01165 1.0kb upstream 1.0kb upstream 1000 false Chr06: 15870196-15871195 Eucalyptus grandis
Eucgr.F01165 1.0kb downstream 1.0kb downstream 2836 true Chr06: 15871196-15874031 Eucalyptus grandis
Eucgr.F01165 1.0kb downstream 1.0kb downstream 1000 false Chr06: 15873032-15874031 Eucalyptus grandis
Eucgr.F01165 2.0kb upstream 2.0kb upstream 3836 true Chr06: 15869196-15873031 Eucalyptus grandis
Eucgr.F01165 2.0kb upstream 2.0kb upstream 2000 false Chr06: 15869196-15871195 Eucalyptus grandis
Eucgr.F01165 2.0kb downstream 2.0kb downstream 3836 true Chr06: 15871196-15875031 Eucalyptus grandis
Eucgr.F01165 2.0kb downstream 2.0kb downstream 2000 false Chr06: 15873032-15875031 Eucalyptus grandis
Eucgr.F01165 5.0kb upstream 5.0kb upstream 6836 true Chr06: 15866196-15873031 Eucalyptus grandis
Eucgr.F01165 5.0kb upstream 5.0kb upstream 5000 false Chr06: 15866196-15871195 Eucalyptus grandis
Eucgr.F01165 5.0kb downstream 5.0kb downstream 6836 true Chr06: 15871196-15878031 Eucalyptus grandis
Eucgr.F01165 5.0kb downstream 5.0kb downstream 5000 false Chr06: 15873032-15878031 Eucalyptus grandis
Eucgr.F01165 10.0kb upstream 10.0kb upstream 11836 true Chr06: 15861196-15873031 Eucalyptus grandis
Eucgr.F01165 10.0kb upstream 10.0kb upstream 10000 false Chr06: 15861196-15871195 Eucalyptus grandis
Eucgr.F01165 10.0kb downstream 10.0kb downstream 11836 true Chr06: 15871196-15883031 Eucalyptus grandis
Eucgr.F01165 10.0kb downstream 10.0kb downstream 10000 false Chr06: 15873032-15883031 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050205 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.86686 0.0 19.5507    
cufflinks 0.640693 0.0 2.66371 Low Low
cufflinks 4.41611 0.0 12.0827    
cufflinks 5.68984 0.0 15.9375    
cufflinks 3.12915 0.0 10.7507    
cufflinks 3.83794 0.0 10.2941    

0 Strain