Gene : Eucgr.F01621 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1393
Name:  ? Eucgr.F01621 Secondary Identifier:  ? PAC:32052563
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F01621 0.5kb upstream 0.5kb upstream 2913 true Chr06: 21508979-21511891 Eucalyptus grandis
Eucgr.F01621 0.5kb upstream 0.5kb upstream 500 false Chr06: 21508979-21509478 Eucalyptus grandis
Eucgr.F01621 0.5kb downstream 0.5kb downstream 2913 true Chr06: 21509479-21512391 Eucalyptus grandis
Eucgr.F01621 0.5kb downstream 0.5kb downstream 500 false Chr06: 21511892-21512391 Eucalyptus grandis
Eucgr.F01621 1.0kb upstream 1.0kb upstream 3413 true Chr06: 21508479-21511891 Eucalyptus grandis
Eucgr.F01621 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21508479-21509478 Eucalyptus grandis
Eucgr.F01621 1.0kb downstream 1.0kb downstream 3413 true Chr06: 21509479-21512891 Eucalyptus grandis
Eucgr.F01621 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21511892-21512891 Eucalyptus grandis
Eucgr.F01621 2.0kb upstream 2.0kb upstream 4413 true Chr06: 21507479-21511891 Eucalyptus grandis
Eucgr.F01621 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21507479-21509478 Eucalyptus grandis
Eucgr.F01621 2.0kb downstream 2.0kb downstream 4413 true Chr06: 21509479-21513891 Eucalyptus grandis
Eucgr.F01621 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21511892-21513891 Eucalyptus grandis
Eucgr.F01621 5.0kb upstream 5.0kb upstream 7413 true Chr06: 21504479-21511891 Eucalyptus grandis
Eucgr.F01621 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21504479-21509478 Eucalyptus grandis
Eucgr.F01621 5.0kb downstream 5.0kb downstream 7413 true Chr06: 21509479-21516891 Eucalyptus grandis
Eucgr.F01621 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21511892-21516891 Eucalyptus grandis
Eucgr.F01621 10.0kb upstream 10.0kb upstream 12413 true Chr06: 21499479-21511891 Eucalyptus grandis
Eucgr.F01621 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21499479-21509478 Eucalyptus grandis
Eucgr.F01621 10.0kb downstream 10.0kb downstream 12413 true Chr06: 21509479-21521891 Eucalyptus grandis
Eucgr.F01621 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21511892-21521891 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026493 5273 Angiosperm View MSA
124068457 5270 Rosid View MSA
123738065 5271 Pentapetalae View MSA
122785849 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.822593 0.0 2.30898    
cufflinks 0.732516 0.0 2.07459 Low  
cufflinks 0.602537 0.0 1.74702   Low
cufflinks 1.19903 0.0 3.22909    
cufflinks 1.02853 0.0 2.82047    
cufflinks 1.77174 0.0 4.60902   High

0 Strain