Gene : Eucgr.F02828 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2492
Name:  ? Eucgr.F02828 Secondary Identifier:  ? PAC:32057674
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F02828 0.5kb upstream 0.5kb upstream 2735 true Chr06: 40463523-40466257 Eucalyptus grandis
Eucgr.F02828 0.5kb upstream 0.5kb upstream 500 false Chr06: 40465758-40466257 Eucalyptus grandis
Eucgr.F02828 0.5kb downstream 0.5kb downstream 2735 true Chr06: 40463023-40465757 Eucalyptus grandis
Eucgr.F02828 0.5kb downstream 0.5kb downstream 500 false Chr06: 40463023-40463522 Eucalyptus grandis
Eucgr.F02828 1.0kb upstream 1.0kb upstream 3235 true Chr06: 40463523-40466757 Eucalyptus grandis
Eucgr.F02828 1.0kb upstream 1.0kb upstream 1000 false Chr06: 40465758-40466757 Eucalyptus grandis
Eucgr.F02828 1.0kb downstream 1.0kb downstream 3235 true Chr06: 40462523-40465757 Eucalyptus grandis
Eucgr.F02828 1.0kb downstream 1.0kb downstream 1000 false Chr06: 40462523-40463522 Eucalyptus grandis
Eucgr.F02828 2.0kb upstream 2.0kb upstream 4235 true Chr06: 40463523-40467757 Eucalyptus grandis
Eucgr.F02828 2.0kb upstream 2.0kb upstream 2000 false Chr06: 40465758-40467757 Eucalyptus grandis
Eucgr.F02828 2.0kb downstream 2.0kb downstream 4235 true Chr06: 40461523-40465757 Eucalyptus grandis
Eucgr.F02828 2.0kb downstream 2.0kb downstream 2000 false Chr06: 40461523-40463522 Eucalyptus grandis
Eucgr.F02828 5.0kb upstream 5.0kb upstream 7235 true Chr06: 40463523-40470757 Eucalyptus grandis
Eucgr.F02828 5.0kb upstream 5.0kb upstream 5000 false Chr06: 40465758-40470757 Eucalyptus grandis
Eucgr.F02828 5.0kb downstream 5.0kb downstream 7235 true Chr06: 40458523-40465757 Eucalyptus grandis
Eucgr.F02828 5.0kb downstream 5.0kb downstream 5000 false Chr06: 40458523-40463522 Eucalyptus grandis
Eucgr.F02828 10.0kb upstream 10.0kb upstream 12235 true Chr06: 40463523-40475757 Eucalyptus grandis
Eucgr.F02828 10.0kb upstream 10.0kb upstream 10000 false Chr06: 40465758-40475757 Eucalyptus grandis
Eucgr.F02828 10.0kb downstream 10.0kb downstream 12235 true Chr06: 40453523-40465757 Eucalyptus grandis
Eucgr.F02828 10.0kb downstream 10.0kb downstream 10000 false Chr06: 40453523-40463522 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063549 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.00463 0.0 5.22871    
cufflinks 1.57822 0.0 4.17026    
cufflinks 2.42023 0.0 6.15736    
cufflinks 0.556402 0.0 1.63249   Low
cufflinks 0.753515 0.0 2.15437    
cufflinks 1.87581 0.0 4.95273    

0 Strain