Gene : Eucgr.F03084 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2736
Name:  ? Eucgr.F03084 Secondary Identifier:  ? PAC:32053702
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F03084 0.5kb upstream 0.5kb upstream 3720 true Chr06: 42759935-42763654 Eucalyptus grandis
Eucgr.F03084 0.5kb upstream 0.5kb upstream 500 false Chr06: 42763155-42763654 Eucalyptus grandis
Eucgr.F03084 0.5kb downstream 0.5kb downstream 3720 true Chr06: 42759435-42763154 Eucalyptus grandis
Eucgr.F03084 0.5kb downstream 0.5kb downstream 500 false Chr06: 42759435-42759934 Eucalyptus grandis
Eucgr.F03084 1.0kb upstream 1.0kb upstream 4220 true Chr06: 42759935-42764154 Eucalyptus grandis
Eucgr.F03084 1.0kb upstream 1.0kb upstream 1000 false Chr06: 42763155-42764154 Eucalyptus grandis
Eucgr.F03084 1.0kb downstream 1.0kb downstream 4220 true Chr06: 42758935-42763154 Eucalyptus grandis
Eucgr.F03084 1.0kb downstream 1.0kb downstream 1000 false Chr06: 42758935-42759934 Eucalyptus grandis
Eucgr.F03084 2.0kb upstream 2.0kb upstream 5220 true Chr06: 42759935-42765154 Eucalyptus grandis
Eucgr.F03084 2.0kb upstream 2.0kb upstream 2000 false Chr06: 42763155-42765154 Eucalyptus grandis
Eucgr.F03084 2.0kb downstream 2.0kb downstream 5220 true Chr06: 42757935-42763154 Eucalyptus grandis
Eucgr.F03084 2.0kb downstream 2.0kb downstream 2000 false Chr06: 42757935-42759934 Eucalyptus grandis
Eucgr.F03084 5.0kb upstream 5.0kb upstream 8220 true Chr06: 42759935-42768154 Eucalyptus grandis
Eucgr.F03084 5.0kb upstream 5.0kb upstream 5000 false Chr06: 42763155-42768154 Eucalyptus grandis
Eucgr.F03084 5.0kb downstream 5.0kb downstream 8220 true Chr06: 42754935-42763154 Eucalyptus grandis
Eucgr.F03084 5.0kb downstream 5.0kb downstream 5000 false Chr06: 42754935-42759934 Eucalyptus grandis
Eucgr.F03084 10.0kb upstream 10.0kb upstream 13220 true Chr06: 42759935-42773154 Eucalyptus grandis
Eucgr.F03084 10.0kb upstream 10.0kb upstream 10000 false Chr06: 42763155-42773154 Eucalyptus grandis
Eucgr.F03084 10.0kb downstream 10.0kb downstream 13220 true Chr06: 42749935-42763154 Eucalyptus grandis
Eucgr.F03084 10.0kb downstream 10.0kb downstream 10000 false Chr06: 42749935-42759934 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060540 5270 Rosid View MSA
123739783 5271 Pentapetalae View MSA
122791645 5272 Eudicot View MSA
122041926 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.5273 0.0 8.97338    
cufflinks 2.26872 0.0 5.9948   Low
cufflinks 4.79707 0.0 11.8083    
cufflinks 4.98268 0.0 12.19    
cufflinks 1.90421 0.0 5.14249   Low
cufflinks 4.17644 0.0 10.4818    

0 Strain