Gene : Eucgr.H00939 E. grandis v2.0
Defline:  (1 of 6) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  507
Name:  ? Eucgr.H00939 Secondary Identifier:  ? PAC:32057389
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00939 0.5kb upstream 0.5kb upstream 4978 true Chr06: 7741050-7746027 Eucalyptus grandis
Eucgr.H00939 0.5kb upstream 0.5kb upstream 500 false Chr06: 7741050-7741549 Eucalyptus grandis
Eucgr.H00939 0.5kb downstream 0.5kb downstream 4978 true Chr06: 7741550-7746527 Eucalyptus grandis
Eucgr.H00939 0.5kb downstream 0.5kb downstream 500 false Chr06: 7746028-7746527 Eucalyptus grandis
Eucgr.H00939 1.0kb upstream 1.0kb upstream 5478 true Chr06: 7740550-7746027 Eucalyptus grandis
Eucgr.H00939 1.0kb upstream 1.0kb upstream 1000 false Chr06: 7740550-7741549 Eucalyptus grandis
Eucgr.H00939 1.0kb downstream 1.0kb downstream 5478 true Chr06: 7741550-7747027 Eucalyptus grandis
Eucgr.H00939 1.0kb downstream 1.0kb downstream 1000 false Chr06: 7746028-7747027 Eucalyptus grandis
Eucgr.H00939 2.0kb upstream 2.0kb upstream 6478 true Chr06: 7739550-7746027 Eucalyptus grandis
Eucgr.H00939 2.0kb upstream 2.0kb upstream 2000 false Chr06: 7739550-7741549 Eucalyptus grandis
Eucgr.H00939 2.0kb downstream 2.0kb downstream 6478 true Chr06: 7741550-7748027 Eucalyptus grandis
Eucgr.H00939 2.0kb downstream 2.0kb downstream 2000 false Chr06: 7746028-7748027 Eucalyptus grandis
Eucgr.H00939 5.0kb upstream 5.0kb upstream 9478 true Chr06: 7736550-7746027 Eucalyptus grandis
Eucgr.H00939 5.0kb upstream 5.0kb upstream 5000 false Chr06: 7736550-7741549 Eucalyptus grandis
Eucgr.H00939 5.0kb downstream 5.0kb downstream 9478 true Chr06: 7741550-7751027 Eucalyptus grandis
Eucgr.H00939 5.0kb downstream 5.0kb downstream 5000 false Chr06: 7746028-7751027 Eucalyptus grandis
Eucgr.H00939 10.0kb upstream 10.0kb upstream 14478 true Chr06: 7731550-7746027 Eucalyptus grandis
Eucgr.H00939 10.0kb upstream 10.0kb upstream 10000 false Chr06: 7731550-7741549 Eucalyptus grandis
Eucgr.H00939 10.0kb downstream 10.0kb downstream 14478 true Chr06: 7741550-7756027 Eucalyptus grandis
Eucgr.H00939 10.0kb downstream 10.0kb downstream 10000 false Chr06: 7746028-7756027 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.982875 0.0 2.78262    
cufflinks 0.106748 0.0 0.395238 Low Low
cufflinks 1.84722 0.0 4.88982    
cufflinks 1.8527 0.0 4.87606    
cufflinks 0.351928 0.0 1.11624 Low  
cufflinks 1.95615 0.0 5.20106    

0 Strain