Gene : Eucgr.F04398 E. grandis v2.0
Defline:  (1 of 1) PTHR11599:SF11 - PROTEASOME SUBUNIT ALPHA TYPE-6 Genomic Order:  3969
Name:  ? Eucgr.F04398 Secondary Identifier:  ? PAC:32054597
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04398 0.5kb upstream 0.5kb upstream 4624 true Chr06: 56542300-56546923 Eucalyptus grandis
Eucgr.F04398 0.5kb upstream 0.5kb upstream 500 false Chr06: 56542300-56542799 Eucalyptus grandis
Eucgr.F04398 0.5kb downstream 0.5kb downstream 4624 true Chr06: 56542800-56547423 Eucalyptus grandis
Eucgr.F04398 0.5kb downstream 0.5kb downstream 500 false Chr06: 56546924-56547423 Eucalyptus grandis
Eucgr.F04398 1.0kb upstream 1.0kb upstream 5124 true Chr06: 56541800-56546923 Eucalyptus grandis
Eucgr.F04398 1.0kb upstream 1.0kb upstream 1000 false Chr06: 56541800-56542799 Eucalyptus grandis
Eucgr.F04398 1.0kb downstream 1.0kb downstream 5124 true Chr06: 56542800-56547923 Eucalyptus grandis
Eucgr.F04398 1.0kb downstream 1.0kb downstream 1000 false Chr06: 56546924-56547923 Eucalyptus grandis
Eucgr.F04398 2.0kb upstream 2.0kb upstream 6124 true Chr06: 56540800-56546923 Eucalyptus grandis
Eucgr.F04398 2.0kb upstream 2.0kb upstream 2000 false Chr06: 56540800-56542799 Eucalyptus grandis
Eucgr.F04398 2.0kb downstream 2.0kb downstream 6124 true Chr06: 56542800-56548923 Eucalyptus grandis
Eucgr.F04398 2.0kb downstream 2.0kb downstream 2000 false Chr06: 56546924-56548923 Eucalyptus grandis
Eucgr.F04398 5.0kb upstream 5.0kb upstream 9124 true Chr06: 56537800-56546923 Eucalyptus grandis
Eucgr.F04398 5.0kb upstream 5.0kb upstream 5000 false Chr06: 56537800-56542799 Eucalyptus grandis
Eucgr.F04398 5.0kb downstream 5.0kb downstream 9124 true Chr06: 56542800-56551923 Eucalyptus grandis
Eucgr.F04398 5.0kb downstream 5.0kb downstream 5000 false Chr06: 56546924-56551923 Eucalyptus grandis
Eucgr.F04398 10.0kb upstream 10.0kb upstream 14124 true Chr06: 56532800-56546923 Eucalyptus grandis
Eucgr.F04398 10.0kb upstream 10.0kb upstream 10000 false Chr06: 56532800-56542799 Eucalyptus grandis
Eucgr.F04398 10.0kb downstream 10.0kb downstream 14124 true Chr06: 56542800-56556923 Eucalyptus grandis
Eucgr.F04398 10.0kb downstream 10.0kb downstream 10000 false Chr06: 56546924-56556923 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041382 5273 Angiosperm View MSA
124061285 5270 Rosid View MSA
123742081 5271 Pentapetalae View MSA
122789367 5272 Eudicot View MSA
121345997 5274 Embryophyte View MSA
123424581 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 78.927 0.0 176.626 High  
cufflinks 75.5375 0.0 168.972 High  
cufflinks 63.9873 0.0 142.275 High Low
cufflinks 71.883 0.0 160.572 High  
cufflinks 113.057 0.0 257.878 High High
cufflinks 81.2803 0.0 181.973 High  

0 Strain