Gene : Eucgr.G00845 E. grandis v2.0
Defline:  (1 of 1) PF01585//PF07842//PF12457 - G-patch domain (G-patch) // GC-rich sequence DNA-binding factor-like protein (GCFC) // Tuftelin interacting protein N terminal (TIP_N) Genomic Order:  530
Name:  ? Eucgr.G00845 Secondary Identifier:  ? PAC:32072520
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G00845 0.5kb upstream 0.5kb upstream 3395 true Chr07: 13044107-13047501 Eucalyptus grandis
Eucgr.G00845 0.5kb upstream 0.5kb upstream 500 false Chr07: 13044107-13044606 Eucalyptus grandis
Eucgr.G00845 0.5kb downstream 0.5kb downstream 3395 true Chr07: 13044607-13048001 Eucalyptus grandis
Eucgr.G00845 0.5kb downstream 0.5kb downstream 500 false Chr07: 13047502-13048001 Eucalyptus grandis
Eucgr.G00845 1.0kb upstream 1.0kb upstream 3895 true Chr07: 13043607-13047501 Eucalyptus grandis
Eucgr.G00845 1.0kb upstream 1.0kb upstream 1000 false Chr07: 13043607-13044606 Eucalyptus grandis
Eucgr.G00845 1.0kb downstream 1.0kb downstream 3895 true Chr07: 13044607-13048501 Eucalyptus grandis
Eucgr.G00845 1.0kb downstream 1.0kb downstream 1000 false Chr07: 13047502-13048501 Eucalyptus grandis
Eucgr.G00845 2.0kb upstream 2.0kb upstream 4895 true Chr07: 13042607-13047501 Eucalyptus grandis
Eucgr.G00845 2.0kb upstream 2.0kb upstream 2000 false Chr07: 13042607-13044606 Eucalyptus grandis
Eucgr.G00845 2.0kb downstream 2.0kb downstream 4895 true Chr07: 13044607-13049501 Eucalyptus grandis
Eucgr.G00845 2.0kb downstream 2.0kb downstream 2000 false Chr07: 13047502-13049501 Eucalyptus grandis
Eucgr.G00845 5.0kb upstream 5.0kb upstream 7895 true Chr07: 13039607-13047501 Eucalyptus grandis
Eucgr.G00845 5.0kb upstream 5.0kb upstream 5000 false Chr07: 13039607-13044606 Eucalyptus grandis
Eucgr.G00845 5.0kb downstream 5.0kb downstream 7895 true Chr07: 13044607-13052501 Eucalyptus grandis
Eucgr.G00845 5.0kb downstream 5.0kb downstream 5000 false Chr07: 13047502-13052501 Eucalyptus grandis
Eucgr.G00845 10.0kb upstream 10.0kb upstream 12895 true Chr07: 13034607-13047501 Eucalyptus grandis
Eucgr.G00845 10.0kb upstream 10.0kb upstream 10000 false Chr07: 13034607-13044606 Eucalyptus grandis
Eucgr.G00845 10.0kb downstream 10.0kb downstream 12895 true Chr07: 13044607-13057501 Eucalyptus grandis
Eucgr.G00845 10.0kb downstream 10.0kb downstream 10000 false Chr07: 13047502-13057501 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068851 5270 Rosid View MSA
123740227 5271 Pentapetalae View MSA
122791304 5272 Eudicot View MSA
122042615 5273 Angiosperm View MSA
121343890 5274 Embryophyte View MSA
123423918 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.7137 0.0 19.4077   High
cufflinks 4.20715 0.0 9.7638    
cufflinks 7.71619 0.0 17.2415    
cufflinks 5.33897 0.0 12.1325    
cufflinks 3.64669 0.0 8.56917   Low
cufflinks 7.11065 0.0 15.9615    

0 Strain