Gene : Eucgr.G02563 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2081
Name:  ? Eucgr.G02563 Secondary Identifier:  ? PAC:32072236
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02563 0.5kb upstream 0.5kb upstream 3950 true Chr07: 46398124-46402073 Eucalyptus grandis
Eucgr.G02563 0.5kb upstream 0.5kb upstream 500 false Chr07: 46401574-46402073 Eucalyptus grandis
Eucgr.G02563 0.5kb downstream 0.5kb downstream 3950 true Chr07: 46397624-46401573 Eucalyptus grandis
Eucgr.G02563 0.5kb downstream 0.5kb downstream 500 false Chr07: 46397624-46398123 Eucalyptus grandis
Eucgr.G02563 1.0kb upstream 1.0kb upstream 4450 true Chr07: 46398124-46402573 Eucalyptus grandis
Eucgr.G02563 1.0kb upstream 1.0kb upstream 1000 false Chr07: 46401574-46402573 Eucalyptus grandis
Eucgr.G02563 1.0kb downstream 1.0kb downstream 4450 true Chr07: 46397124-46401573 Eucalyptus grandis
Eucgr.G02563 1.0kb downstream 1.0kb downstream 1000 false Chr07: 46397124-46398123 Eucalyptus grandis
Eucgr.G02563 2.0kb upstream 2.0kb upstream 5450 true Chr07: 46398124-46403573 Eucalyptus grandis
Eucgr.G02563 2.0kb upstream 2.0kb upstream 2000 false Chr07: 46401574-46403573 Eucalyptus grandis
Eucgr.G02563 2.0kb downstream 2.0kb downstream 5450 true Chr07: 46396124-46401573 Eucalyptus grandis
Eucgr.G02563 2.0kb downstream 2.0kb downstream 2000 false Chr07: 46396124-46398123 Eucalyptus grandis
Eucgr.G02563 5.0kb upstream 5.0kb upstream 8450 true Chr07: 46398124-46406573 Eucalyptus grandis
Eucgr.G02563 5.0kb upstream 5.0kb upstream 5000 false Chr07: 46401574-46406573 Eucalyptus grandis
Eucgr.G02563 5.0kb downstream 5.0kb downstream 8450 true Chr07: 46393124-46401573 Eucalyptus grandis
Eucgr.G02563 5.0kb downstream 5.0kb downstream 5000 false Chr07: 46393124-46398123 Eucalyptus grandis
Eucgr.G02563 10.0kb upstream 10.0kb upstream 13450 true Chr07: 46398124-46411573 Eucalyptus grandis
Eucgr.G02563 10.0kb upstream 10.0kb upstream 10000 false Chr07: 46401574-46411573 Eucalyptus grandis
Eucgr.G02563 10.0kb downstream 10.0kb downstream 13450 true Chr07: 46388124-46401573 Eucalyptus grandis
Eucgr.G02563 10.0kb downstream 10.0kb downstream 10000 false Chr07: 46388124-46398123 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066069 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.22245 0.0 3.23623   High
cufflinks 0.566476 0.0 1.60434 Low  
cufflinks 0.619182 0.0 1.74141    
cufflinks 0.610813 0.0 1.70795    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.228238 0.0 0.734029 Low Low

0 Strain