Gene : Eucgr.G02942 E. grandis v2.0
Defline:  (1 of 1) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase Genomic Order:  2428
Name:  ? Eucgr.G02942 Secondary Identifier:  ? PAC:32072988
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02942 0.5kb upstream 0.5kb upstream 3721 true Chr07: 50621861-50625581 Eucalyptus grandis
Eucgr.G02942 0.5kb upstream 0.5kb upstream 500 false Chr07: 50621861-50622360 Eucalyptus grandis
Eucgr.G02942 0.5kb downstream 0.5kb downstream 3721 true Chr07: 50622361-50626081 Eucalyptus grandis
Eucgr.G02942 0.5kb downstream 0.5kb downstream 500 false Chr07: 50625582-50626081 Eucalyptus grandis
Eucgr.G02942 1.0kb upstream 1.0kb upstream 4221 true Chr07: 50621361-50625581 Eucalyptus grandis
Eucgr.G02942 1.0kb upstream 1.0kb upstream 1000 false Chr07: 50621361-50622360 Eucalyptus grandis
Eucgr.G02942 1.0kb downstream 1.0kb downstream 4221 true Chr07: 50622361-50626581 Eucalyptus grandis
Eucgr.G02942 1.0kb downstream 1.0kb downstream 1000 false Chr07: 50625582-50626581 Eucalyptus grandis
Eucgr.G02942 2.0kb upstream 2.0kb upstream 5221 true Chr07: 50620361-50625581 Eucalyptus grandis
Eucgr.G02942 2.0kb upstream 2.0kb upstream 2000 false Chr07: 50620361-50622360 Eucalyptus grandis
Eucgr.G02942 2.0kb downstream 2.0kb downstream 5221 true Chr07: 50622361-50627581 Eucalyptus grandis
Eucgr.G02942 2.0kb downstream 2.0kb downstream 2000 false Chr07: 50625582-50627581 Eucalyptus grandis
Eucgr.G02942 5.0kb upstream 5.0kb upstream 8221 true Chr07: 50617361-50625581 Eucalyptus grandis
Eucgr.G02942 5.0kb upstream 5.0kb upstream 5000 false Chr07: 50617361-50622360 Eucalyptus grandis
Eucgr.G02942 5.0kb downstream 5.0kb downstream 8221 true Chr07: 50622361-50630581 Eucalyptus grandis
Eucgr.G02942 5.0kb downstream 5.0kb downstream 5000 false Chr07: 50625582-50630581 Eucalyptus grandis
Eucgr.G02942 10.0kb upstream 10.0kb upstream 13221 true Chr07: 50612361-50625581 Eucalyptus grandis
Eucgr.G02942 10.0kb upstream 10.0kb upstream 10000 false Chr07: 50612361-50622360 Eucalyptus grandis
Eucgr.G02942 10.0kb downstream 10.0kb downstream 13221 true Chr07: 50622361-50635581 Eucalyptus grandis
Eucgr.G02942 10.0kb downstream 10.0kb downstream 10000 false Chr07: 50625582-50635581 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063503 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.14521 0.0 20.1793    
cufflinks 4.16337 0.0 11.0012   Low
cufflinks 8.28732 0.0 20.512   High
cufflinks 4.99373 0.0 12.9837    
cufflinks 5.89902 0.0 15.1145    
cufflinks 7.07333 0.0 17.7523    

0 Strain