Gene : Eucgr.G02868 E. grandis v2.0
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  2277
Name:  ? Eucgr.G02868 Secondary Identifier:  ? PAC:32070540
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6441 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02868 0.5kb upstream 0.5kb upstream 9598 true Chr07: 48392924-48402521 Eucalyptus grandis
Eucgr.G02868 0.5kb upstream 0.5kb upstream 500 false Chr07: 48402022-48402521 Eucalyptus grandis
Eucgr.G02868 0.5kb downstream 0.5kb downstream 9598 true Chr07: 48392424-48402021 Eucalyptus grandis
Eucgr.G02868 0.5kb downstream 0.5kb downstream 500 false Chr07: 48392424-48392923 Eucalyptus grandis
Eucgr.G02868 1.0kb upstream 1.0kb upstream 10098 true Chr07: 48392924-48403021 Eucalyptus grandis
Eucgr.G02868 1.0kb upstream 1.0kb upstream 1000 false Chr07: 48402022-48403021 Eucalyptus grandis
Eucgr.G02868 1.0kb downstream 1.0kb downstream 10098 true Chr07: 48391924-48402021 Eucalyptus grandis
Eucgr.G02868 1.0kb downstream 1.0kb downstream 1000 false Chr07: 48391924-48392923 Eucalyptus grandis
Eucgr.G02868 2.0kb upstream 2.0kb upstream 11098 true Chr07: 48392924-48404021 Eucalyptus grandis
Eucgr.G02868 2.0kb upstream 2.0kb upstream 2000 false Chr07: 48402022-48404021 Eucalyptus grandis
Eucgr.G02868 2.0kb downstream 2.0kb downstream 11098 true Chr07: 48390924-48402021 Eucalyptus grandis
Eucgr.G02868 2.0kb downstream 2.0kb downstream 2000 false Chr07: 48390924-48392923 Eucalyptus grandis
Eucgr.G02868 5.0kb upstream 5.0kb upstream 14098 true Chr07: 48392924-48407021 Eucalyptus grandis
Eucgr.G02868 5.0kb upstream 5.0kb upstream 5000 false Chr07: 48402022-48407021 Eucalyptus grandis
Eucgr.G02868 5.0kb downstream 5.0kb downstream 14098 true Chr07: 48387924-48402021 Eucalyptus grandis
Eucgr.G02868 5.0kb downstream 5.0kb downstream 5000 false Chr07: 48387924-48392923 Eucalyptus grandis
Eucgr.G02868 10.0kb upstream 10.0kb upstream 19098 true Chr07: 48392924-48412021 Eucalyptus grandis
Eucgr.G02868 10.0kb upstream 10.0kb upstream 10000 false Chr07: 48402022-48412021 Eucalyptus grandis
Eucgr.G02868 10.0kb downstream 10.0kb downstream 19098 true Chr07: 48382924-48402021 Eucalyptus grandis
Eucgr.G02868 10.0kb downstream 10.0kb downstream 10000 false Chr07: 48382924-48392923 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068541 5270 Rosid View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.37097 0.0 12.863    
cufflinks 1.89851 0.0 4.85497   Low
cufflinks 4.3751 0.0 10.1258    
cufflinks 2.87853 0.0 6.87269    
cufflinks 1.94887 0.0 4.92789   Low
cufflinks 6.74749 0.0 17.4363   High

0 Strain