Gene : Eucgr.H00112 E. grandis v2.0
Defline:  (1 of 1) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Genomic Order:  344
Name:  ? Eucgr.H00112 Secondary Identifier:  ? PAC:32044690
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5068 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00112 0.5kb upstream 0.5kb upstream 7935 true Chr08: 4873892-4881826 Eucalyptus grandis
Eucgr.H00112 0.5kb upstream 0.5kb upstream 500 false Chr08: 4873892-4874391 Eucalyptus grandis
Eucgr.H00112 0.5kb downstream 0.5kb downstream 7935 true Chr08: 4874392-4882326 Eucalyptus grandis
Eucgr.H00112 0.5kb downstream 0.5kb downstream 500 false Chr08: 4881827-4882326 Eucalyptus grandis
Eucgr.H00112 1.0kb upstream 1.0kb upstream 8435 true Chr08: 4873392-4881826 Eucalyptus grandis
Eucgr.H00112 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4873392-4874391 Eucalyptus grandis
Eucgr.H00112 1.0kb downstream 1.0kb downstream 8435 true Chr08: 4874392-4882826 Eucalyptus grandis
Eucgr.H00112 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4881827-4882826 Eucalyptus grandis
Eucgr.H00112 2.0kb upstream 2.0kb upstream 9435 true Chr08: 4872392-4881826 Eucalyptus grandis
Eucgr.H00112 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4872392-4874391 Eucalyptus grandis
Eucgr.H00112 2.0kb downstream 2.0kb downstream 9435 true Chr08: 4874392-4883826 Eucalyptus grandis
Eucgr.H00112 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4881827-4883826 Eucalyptus grandis
Eucgr.H00112 5.0kb upstream 5.0kb upstream 12435 true Chr08: 4869392-4881826 Eucalyptus grandis
Eucgr.H00112 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4869392-4874391 Eucalyptus grandis
Eucgr.H00112 5.0kb downstream 5.0kb downstream 12435 true Chr08: 4874392-4886826 Eucalyptus grandis
Eucgr.H00112 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4881827-4886826 Eucalyptus grandis
Eucgr.H00112 10.0kb upstream 10.0kb upstream 17435 true Chr08: 4864392-4881826 Eucalyptus grandis
Eucgr.H00112 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4864392-4874391 Eucalyptus grandis
Eucgr.H00112 10.0kb downstream 10.0kb downstream 17435 true Chr08: 4874392-4891826 Eucalyptus grandis
Eucgr.H00112 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4881827-4891826 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.6815 0.0 9.02129    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.38774 0.0 6.09754    
cufflinks 0.249832 0.0 0.812546 Low Low
cufflinks 0.76547 0.0 2.18855    
cufflinks 9.00073 0.0 20.4793   High

0 Strain