Gene : Eucgr.H00407 E. grandis v2.0
Defline:  (1 of 6) PTHR13952:SF6 - U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN Genomic Order:  139
Name:  ? Eucgr.H00407 Secondary Identifier:  ? PAC:32043323
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00407 0.5kb upstream 0.5kb upstream 4388 true Chr08: 2184694-2189081 Eucalyptus grandis
Eucgr.H00407 0.5kb upstream 0.5kb upstream 500 false Chr08: 2184694-2185193 Eucalyptus grandis
Eucgr.H00407 0.5kb downstream 0.5kb downstream 4388 true Chr08: 2185194-2189581 Eucalyptus grandis
Eucgr.H00407 0.5kb downstream 0.5kb downstream 500 false Chr08: 2189082-2189581 Eucalyptus grandis
Eucgr.H00407 1.0kb upstream 1.0kb upstream 4888 true Chr08: 2184194-2189081 Eucalyptus grandis
Eucgr.H00407 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2184194-2185193 Eucalyptus grandis
Eucgr.H00407 1.0kb downstream 1.0kb downstream 4888 true Chr08: 2185194-2190081 Eucalyptus grandis
Eucgr.H00407 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2189082-2190081 Eucalyptus grandis
Eucgr.H00407 2.0kb upstream 2.0kb upstream 5888 true Chr08: 2183194-2189081 Eucalyptus grandis
Eucgr.H00407 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2183194-2185193 Eucalyptus grandis
Eucgr.H00407 2.0kb downstream 2.0kb downstream 5888 true Chr08: 2185194-2191081 Eucalyptus grandis
Eucgr.H00407 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2189082-2191081 Eucalyptus grandis
Eucgr.H00407 5.0kb upstream 5.0kb upstream 8888 true Chr08: 2180194-2189081 Eucalyptus grandis
Eucgr.H00407 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2180194-2185193 Eucalyptus grandis
Eucgr.H00407 5.0kb downstream 5.0kb downstream 8888 true Chr08: 2185194-2194081 Eucalyptus grandis
Eucgr.H00407 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2189082-2194081 Eucalyptus grandis
Eucgr.H00407 10.0kb upstream 10.0kb upstream 13888 true Chr08: 2175194-2189081 Eucalyptus grandis
Eucgr.H00407 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2175194-2185193 Eucalyptus grandis
Eucgr.H00407 10.0kb downstream 10.0kb downstream 13888 true Chr08: 2185194-2199081 Eucalyptus grandis
Eucgr.H00407 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2189082-2199081 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062373 5270 Rosid View MSA
123739426 5271 Pentapetalae View MSA
122792874 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.3654 0.0 4.12786   Low
cufflinks 6.82127 0.0 17.3986   High
cufflinks 1.95282 0.0 5.6861    
cufflinks 3.93845 0.0 10.6518    
cufflinks 7.90034 0.0 19.9128   High
cufflinks 2.41172 0.0 6.85092    

0 Strain