Gene : Eucgr.H01216 E. grandis v2.0
Defline:  (1 of 5) KOG0144 - RNA-binding protein CUGBP1/BRUNO (RRM superfamily) Genomic Order:  992
Name:  ? Eucgr.H01216 Secondary Identifier:  ? PAC:32042228
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Ontology Annotation Displayer

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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01216 0.5kb upstream 0.5kb upstream 7592 true Chr08: 14030253-14037844 Eucalyptus grandis
Eucgr.H01216 0.5kb upstream 0.5kb upstream 500 false Chr08: 14030253-14030752 Eucalyptus grandis
Eucgr.H01216 0.5kb downstream 0.5kb downstream 7592 true Chr08: 14030753-14038344 Eucalyptus grandis
Eucgr.H01216 0.5kb downstream 0.5kb downstream 500 false Chr08: 14037845-14038344 Eucalyptus grandis
Eucgr.H01216 1.0kb upstream 1.0kb upstream 8092 true Chr08: 14029753-14037844 Eucalyptus grandis
Eucgr.H01216 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14029753-14030752 Eucalyptus grandis
Eucgr.H01216 1.0kb downstream 1.0kb downstream 8092 true Chr08: 14030753-14038844 Eucalyptus grandis
Eucgr.H01216 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14037845-14038844 Eucalyptus grandis
Eucgr.H01216 2.0kb upstream 2.0kb upstream 9092 true Chr08: 14028753-14037844 Eucalyptus grandis
Eucgr.H01216 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14028753-14030752 Eucalyptus grandis
Eucgr.H01216 2.0kb downstream 2.0kb downstream 9092 true Chr08: 14030753-14039844 Eucalyptus grandis
Eucgr.H01216 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14037845-14039844 Eucalyptus grandis
Eucgr.H01216 5.0kb upstream 5.0kb upstream 12092 true Chr08: 14025753-14037844 Eucalyptus grandis
Eucgr.H01216 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14025753-14030752 Eucalyptus grandis
Eucgr.H01216 5.0kb downstream 5.0kb downstream 12092 true Chr08: 14030753-14042844 Eucalyptus grandis
Eucgr.H01216 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14037845-14042844 Eucalyptus grandis
Eucgr.H01216 10.0kb upstream 10.0kb upstream 17092 true Chr08: 14020753-14037844 Eucalyptus grandis
Eucgr.H01216 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14020753-14030752 Eucalyptus grandis
Eucgr.H01216 10.0kb downstream 10.0kb downstream 17092 true Chr08: 14030753-14047844 Eucalyptus grandis
Eucgr.H01216 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14037845-14047844 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062995 5270 Rosid View MSA
123747202 5271 Pentapetalae View MSA
122791871 5272 Eudicot View MSA
122044702 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349683 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.906 0.0 62.5352    
cufflinks 25.8583 0.0 71.4924    
cufflinks 20.2304 0.0 53.0337    
cufflinks 36.8518 0.0 90.1572    
cufflinks 31.1515 0.0 82.1466    
cufflinks 6.05485 0.0 15.9888   Low

0 Strain