Gene : Eucgr.H02072 E. grandis v2.0
Defline:  (1 of 5) PF02338//PF02810 - OTU-like cysteine protease (OTU) // SEC-C motif (SEC-C) Genomic Order:  1621
Name:  ? Eucgr.H02072 Secondary Identifier:  ? PAC:32041719
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02072 0.5kb upstream 0.5kb upstream 7209 true Chr08: 25562927-25570135 Eucalyptus grandis
Eucgr.H02072 0.5kb upstream 0.5kb upstream 500 false Chr08: 25562927-25563426 Eucalyptus grandis
Eucgr.H02072 0.5kb downstream 0.5kb downstream 7209 true Chr08: 25563427-25570635 Eucalyptus grandis
Eucgr.H02072 0.5kb downstream 0.5kb downstream 500 false Chr08: 25570136-25570635 Eucalyptus grandis
Eucgr.H02072 1.0kb upstream 1.0kb upstream 7709 true Chr08: 25562427-25570135 Eucalyptus grandis
Eucgr.H02072 1.0kb upstream 1.0kb upstream 1000 false Chr08: 25562427-25563426 Eucalyptus grandis
Eucgr.H02072 1.0kb downstream 1.0kb downstream 7709 true Chr08: 25563427-25571135 Eucalyptus grandis
Eucgr.H02072 1.0kb downstream 1.0kb downstream 1000 false Chr08: 25570136-25571135 Eucalyptus grandis
Eucgr.H02072 2.0kb upstream 2.0kb upstream 8709 true Chr08: 25561427-25570135 Eucalyptus grandis
Eucgr.H02072 2.0kb upstream 2.0kb upstream 2000 false Chr08: 25561427-25563426 Eucalyptus grandis
Eucgr.H02072 2.0kb downstream 2.0kb downstream 8709 true Chr08: 25563427-25572135 Eucalyptus grandis
Eucgr.H02072 2.0kb downstream 2.0kb downstream 2000 false Chr08: 25570136-25572135 Eucalyptus grandis
Eucgr.H02072 5.0kb upstream 5.0kb upstream 11709 true Chr08: 25558427-25570135 Eucalyptus grandis
Eucgr.H02072 5.0kb upstream 5.0kb upstream 5000 false Chr08: 25558427-25563426 Eucalyptus grandis
Eucgr.H02072 5.0kb downstream 5.0kb downstream 11709 true Chr08: 25563427-25575135 Eucalyptus grandis
Eucgr.H02072 5.0kb downstream 5.0kb downstream 5000 false Chr08: 25570136-25575135 Eucalyptus grandis
Eucgr.H02072 10.0kb upstream 10.0kb upstream 16709 true Chr08: 25553427-25570135 Eucalyptus grandis
Eucgr.H02072 10.0kb upstream 10.0kb upstream 10000 false Chr08: 25553427-25563426 Eucalyptus grandis
Eucgr.H02072 10.0kb downstream 10.0kb downstream 16709 true Chr08: 25563427-25580135 Eucalyptus grandis
Eucgr.H02072 10.0kb downstream 10.0kb downstream 10000 false Chr08: 25570136-25580135 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066483 5270 Rosid View MSA
123745546 5271 Pentapetalae View MSA
122787389 5272 Eudicot View MSA
122041608 5273 Angiosperm View MSA
121347051 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.57211 0.0 7.33794    
cufflinks 4.78164 0.0 13.2259    
cufflinks 2.38366 0.0 7.66471    
cufflinks 2.33627 0.0 6.70585    
cufflinks 2.06498 0.0 7.09108    
cufflinks 6.18817 0.0 18.1505   High

0 Strain