Gene : Eucgr.H01992 E. grandis v2.0
Defline:  (1 of 2) PF01535//PF12854//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1435
Name:  ? Eucgr.H01992 Secondary Identifier:  ? PAC:32045120
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01992 0.5kb upstream 0.5kb upstream 3949 true Chr08: 20702506-20706454 Eucalyptus grandis
Eucgr.H01992 0.5kb upstream 0.5kb upstream 500 false Chr08: 20705955-20706454 Eucalyptus grandis
Eucgr.H01992 0.5kb downstream 0.5kb downstream 3949 true Chr08: 20702006-20705954 Eucalyptus grandis
Eucgr.H01992 0.5kb downstream 0.5kb downstream 500 false Chr08: 20702006-20702505 Eucalyptus grandis
Eucgr.H01992 1.0kb upstream 1.0kb upstream 4449 true Chr08: 20702506-20706954 Eucalyptus grandis
Eucgr.H01992 1.0kb upstream 1.0kb upstream 1000 false Chr08: 20705955-20706954 Eucalyptus grandis
Eucgr.H01992 1.0kb downstream 1.0kb downstream 4449 true Chr08: 20701506-20705954 Eucalyptus grandis
Eucgr.H01992 1.0kb downstream 1.0kb downstream 1000 false Chr08: 20701506-20702505 Eucalyptus grandis
Eucgr.H01992 2.0kb upstream 2.0kb upstream 5449 true Chr08: 20702506-20707954 Eucalyptus grandis
Eucgr.H01992 2.0kb upstream 2.0kb upstream 2000 false Chr08: 20705955-20707954 Eucalyptus grandis
Eucgr.H01992 2.0kb downstream 2.0kb downstream 5449 true Chr08: 20700506-20705954 Eucalyptus grandis
Eucgr.H01992 2.0kb downstream 2.0kb downstream 2000 false Chr08: 20700506-20702505 Eucalyptus grandis
Eucgr.H01992 5.0kb upstream 5.0kb upstream 8449 true Chr08: 20702506-20710954 Eucalyptus grandis
Eucgr.H01992 5.0kb upstream 5.0kb upstream 5000 false Chr08: 20705955-20710954 Eucalyptus grandis
Eucgr.H01992 5.0kb downstream 5.0kb downstream 8449 true Chr08: 20697506-20705954 Eucalyptus grandis
Eucgr.H01992 5.0kb downstream 5.0kb downstream 5000 false Chr08: 20697506-20702505 Eucalyptus grandis
Eucgr.H01992 10.0kb upstream 10.0kb upstream 13449 true Chr08: 20702506-20715954 Eucalyptus grandis
Eucgr.H01992 10.0kb upstream 10.0kb upstream 10000 false Chr08: 20705955-20715954 Eucalyptus grandis
Eucgr.H01992 10.0kb downstream 10.0kb downstream 13449 true Chr08: 20692506-20705954 Eucalyptus grandis
Eucgr.H01992 10.0kb downstream 10.0kb downstream 10000 false Chr08: 20692506-20702505 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072363 5270 Rosid View MSA
123740411 5271 Pentapetalae View MSA
122793387 5272 Eudicot View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.92108 0.0 7.10512    
cufflinks 1.75844 0.0 4.46466   Low
cufflinks 2.68688 0.0 6.55556    
cufflinks 3.22406 0.0 7.68344    
cufflinks 10.0872 0.0 22.4464   High
cufflinks 2.95127 0.0 7.21205    

0 Strain