Gene : Eucgr.H01997 E. grandis v2.0
Defline:  (1 of 4) 1.1.1.102 - 3-dehydrosphinganine reductase / KTS reductase Genomic Order:  1438
Name:  ? Eucgr.H01997 Secondary Identifier:  ? PAC:32043288
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5129 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01997 0.5kb upstream 0.5kb upstream 4865 true Chr08: 20780792-20785656 Eucalyptus grandis
Eucgr.H01997 0.5kb upstream 0.5kb upstream 500 false Chr08: 20785157-20785656 Eucalyptus grandis
Eucgr.H01997 0.5kb downstream 0.5kb downstream 4865 true Chr08: 20780292-20785156 Eucalyptus grandis
Eucgr.H01997 0.5kb downstream 0.5kb downstream 500 false Chr08: 20780292-20780791 Eucalyptus grandis
Eucgr.H01997 1.0kb upstream 1.0kb upstream 5365 true Chr08: 20780792-20786156 Eucalyptus grandis
Eucgr.H01997 1.0kb upstream 1.0kb upstream 1000 false Chr08: 20785157-20786156 Eucalyptus grandis
Eucgr.H01997 1.0kb downstream 1.0kb downstream 5365 true Chr08: 20779792-20785156 Eucalyptus grandis
Eucgr.H01997 1.0kb downstream 1.0kb downstream 1000 false Chr08: 20779792-20780791 Eucalyptus grandis
Eucgr.H01997 2.0kb upstream 2.0kb upstream 6365 true Chr08: 20780792-20787156 Eucalyptus grandis
Eucgr.H01997 2.0kb upstream 2.0kb upstream 2000 false Chr08: 20785157-20787156 Eucalyptus grandis
Eucgr.H01997 2.0kb downstream 2.0kb downstream 6365 true Chr08: 20778792-20785156 Eucalyptus grandis
Eucgr.H01997 2.0kb downstream 2.0kb downstream 2000 false Chr08: 20778792-20780791 Eucalyptus grandis
Eucgr.H01997 5.0kb upstream 5.0kb upstream 9365 true Chr08: 20780792-20790156 Eucalyptus grandis
Eucgr.H01997 5.0kb upstream 5.0kb upstream 5000 false Chr08: 20785157-20790156 Eucalyptus grandis
Eucgr.H01997 5.0kb downstream 5.0kb downstream 9365 true Chr08: 20775792-20785156 Eucalyptus grandis
Eucgr.H01997 5.0kb downstream 5.0kb downstream 5000 false Chr08: 20775792-20780791 Eucalyptus grandis
Eucgr.H01997 10.0kb upstream 10.0kb upstream 14365 true Chr08: 20780792-20795156 Eucalyptus grandis
Eucgr.H01997 10.0kb upstream 10.0kb upstream 10000 false Chr08: 20785157-20795156 Eucalyptus grandis
Eucgr.H01997 10.0kb downstream 10.0kb downstream 14365 true Chr08: 20770792-20785156 Eucalyptus grandis
Eucgr.H01997 10.0kb downstream 10.0kb downstream 10000 false Chr08: 20770792-20780791 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050243 5270 Rosid View MSA
123736848 5271 Pentapetalae View MSA
122788663 5272 Eudicot View MSA
122042834 5273 Angiosperm View MSA
121346352 5274 Embryophyte View MSA
123423987 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.25801 0.0 19.9944    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 17.0518 0.0 39.0845   High
cufflinks 1.41219 0.0 4.14338   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.26202 0.0 13.2063    

0 Strain