Gene : Eucgr.H02622 E. grandis v2.0
Defline:  (1 of 2) PTHR11558:SF25 - SPERMINE SYNTHASE Genomic Order:  2039
Name:  ? Eucgr.H02622 Secondary Identifier:  ? PAC:32044768
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BSUBPOLYAMSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-7528 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02622 0.5kb upstream 0.5kb upstream 5920 true Chr08: 35328576-35334495 Eucalyptus grandis
Eucgr.H02622 0.5kb upstream 0.5kb upstream 500 false Chr08: 35333996-35334495 Eucalyptus grandis
Eucgr.H02622 0.5kb downstream 0.5kb downstream 5920 true Chr08: 35328076-35333995 Eucalyptus grandis
Eucgr.H02622 0.5kb downstream 0.5kb downstream 500 false Chr08: 35328076-35328575 Eucalyptus grandis
Eucgr.H02622 1.0kb upstream 1.0kb upstream 6420 true Chr08: 35328576-35334995 Eucalyptus grandis
Eucgr.H02622 1.0kb upstream 1.0kb upstream 1000 false Chr08: 35333996-35334995 Eucalyptus grandis
Eucgr.H02622 1.0kb downstream 1.0kb downstream 6420 true Chr08: 35327576-35333995 Eucalyptus grandis
Eucgr.H02622 1.0kb downstream 1.0kb downstream 1000 false Chr08: 35327576-35328575 Eucalyptus grandis
Eucgr.H02622 2.0kb upstream 2.0kb upstream 7420 true Chr08: 35328576-35335995 Eucalyptus grandis
Eucgr.H02622 2.0kb upstream 2.0kb upstream 2000 false Chr08: 35333996-35335995 Eucalyptus grandis
Eucgr.H02622 2.0kb downstream 2.0kb downstream 7420 true Chr08: 35326576-35333995 Eucalyptus grandis
Eucgr.H02622 2.0kb downstream 2.0kb downstream 2000 false Chr08: 35326576-35328575 Eucalyptus grandis
Eucgr.H02622 5.0kb upstream 5.0kb upstream 10420 true Chr08: 35328576-35338995 Eucalyptus grandis
Eucgr.H02622 5.0kb upstream 5.0kb upstream 5000 false Chr08: 35333996-35338995 Eucalyptus grandis
Eucgr.H02622 5.0kb downstream 5.0kb downstream 10420 true Chr08: 35323576-35333995 Eucalyptus grandis
Eucgr.H02622 5.0kb downstream 5.0kb downstream 5000 false Chr08: 35323576-35328575 Eucalyptus grandis
Eucgr.H02622 10.0kb upstream 10.0kb upstream 15420 true Chr08: 35328576-35343995 Eucalyptus grandis
Eucgr.H02622 10.0kb upstream 10.0kb upstream 10000 false Chr08: 35333996-35343995 Eucalyptus grandis
Eucgr.H02622 10.0kb downstream 10.0kb downstream 15420 true Chr08: 35318576-35333995 Eucalyptus grandis
Eucgr.H02622 10.0kb downstream 10.0kb downstream 10000 false Chr08: 35318576-35328575 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 120.791 0.0 282.64 High  
cufflinks 33.8568 0.0 74.9042   Low
cufflinks 98.2962 0.0 226.509 High  
cufflinks 163.173 0.0 394.473 High High
cufflinks 58.8024 0.0 131.679 High  
cufflinks 96.7343 0.0 222.509 High  

0 Strain