Gene : Eucgr.H04482 E. grandis v2.0
Defline:  (1 of 2) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  3408
Name:  ? Eucgr.H04482 Secondary Identifier:  ? PAC:32045481
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04482 0.5kb upstream 0.5kb upstream 3824 true Chr08: 60701349-60705172 Eucalyptus grandis
Eucgr.H04482 0.5kb upstream 0.5kb upstream 500 false Chr08: 60701349-60701848 Eucalyptus grandis
Eucgr.H04482 0.5kb downstream 0.5kb downstream 3824 true Chr08: 60701849-60705672 Eucalyptus grandis
Eucgr.H04482 0.5kb downstream 0.5kb downstream 500 false Chr08: 60705173-60705672 Eucalyptus grandis
Eucgr.H04482 1.0kb upstream 1.0kb upstream 4324 true Chr08: 60700849-60705172 Eucalyptus grandis
Eucgr.H04482 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60700849-60701848 Eucalyptus grandis
Eucgr.H04482 1.0kb downstream 1.0kb downstream 4324 true Chr08: 60701849-60706172 Eucalyptus grandis
Eucgr.H04482 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60705173-60706172 Eucalyptus grandis
Eucgr.H04482 2.0kb upstream 2.0kb upstream 5324 true Chr08: 60699849-60705172 Eucalyptus grandis
Eucgr.H04482 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60699849-60701848 Eucalyptus grandis
Eucgr.H04482 2.0kb downstream 2.0kb downstream 5324 true Chr08: 60701849-60707172 Eucalyptus grandis
Eucgr.H04482 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60705173-60707172 Eucalyptus grandis
Eucgr.H04482 5.0kb upstream 5.0kb upstream 8324 true Chr08: 60696849-60705172 Eucalyptus grandis
Eucgr.H04482 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60696849-60701848 Eucalyptus grandis
Eucgr.H04482 5.0kb downstream 5.0kb downstream 8324 true Chr08: 60701849-60710172 Eucalyptus grandis
Eucgr.H04482 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60705173-60710172 Eucalyptus grandis
Eucgr.H04482 10.0kb upstream 10.0kb upstream 13324 true Chr08: 60691849-60705172 Eucalyptus grandis
Eucgr.H04482 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60691849-60701848 Eucalyptus grandis
Eucgr.H04482 10.0kb downstream 10.0kb downstream 13324 true Chr08: 60701849-60715172 Eucalyptus grandis
Eucgr.H04482 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60705173-60715172 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063833 5270 Rosid View MSA
123738536 5271 Pentapetalae View MSA
122786779 5272 Eudicot View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.8041 0.0 77.1582 High  
cufflinks 25.903 0.0 57.2836    
cufflinks 25.9244 0.0 57.3309 High  
cufflinks 28.0218 0.0 61.9982    
cufflinks 31.7056 0.0 70.2092    
cufflinks 38.8487 0.0 86.2574 High High

0 Strain