Gene : Eucgr.I02272 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1909
Name:  ? Eucgr.I02272 Secondary Identifier:  ? PAC:32063339
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02272 0.5kb upstream 0.5kb upstream 1500 true Chr09: 33095863-33097362 Eucalyptus grandis
Eucgr.I02272 0.5kb upstream 0.5kb upstream 500 false Chr09: 33095863-33096362 Eucalyptus grandis
Eucgr.I02272 0.5kb downstream 0.5kb downstream 1500 true Chr09: 33096363-33097862 Eucalyptus grandis
Eucgr.I02272 0.5kb downstream 0.5kb downstream 500 false Chr09: 33097363-33097862 Eucalyptus grandis
Eucgr.I02272 1.0kb upstream 1.0kb upstream 2000 true Chr09: 33095363-33097362 Eucalyptus grandis
Eucgr.I02272 1.0kb upstream 1.0kb upstream 1000 false Chr09: 33095363-33096362 Eucalyptus grandis
Eucgr.I02272 1.0kb downstream 1.0kb downstream 2000 true Chr09: 33096363-33098362 Eucalyptus grandis
Eucgr.I02272 1.0kb downstream 1.0kb downstream 1000 false Chr09: 33097363-33098362 Eucalyptus grandis
Eucgr.I02272 2.0kb upstream 2.0kb upstream 3000 true Chr09: 33094363-33097362 Eucalyptus grandis
Eucgr.I02272 2.0kb upstream 2.0kb upstream 2000 false Chr09: 33094363-33096362 Eucalyptus grandis
Eucgr.I02272 2.0kb downstream 2.0kb downstream 3000 true Chr09: 33096363-33099362 Eucalyptus grandis
Eucgr.I02272 2.0kb downstream 2.0kb downstream 2000 false Chr09: 33097363-33099362 Eucalyptus grandis
Eucgr.I02272 5.0kb upstream 5.0kb upstream 6000 true Chr09: 33091363-33097362 Eucalyptus grandis
Eucgr.I02272 5.0kb upstream 5.0kb upstream 5000 false Chr09: 33091363-33096362 Eucalyptus grandis
Eucgr.I02272 5.0kb downstream 5.0kb downstream 6000 true Chr09: 33096363-33102362 Eucalyptus grandis
Eucgr.I02272 5.0kb downstream 5.0kb downstream 5000 false Chr09: 33097363-33102362 Eucalyptus grandis
Eucgr.I02272 10.0kb upstream 10.0kb upstream 11000 true Chr09: 33086363-33097362 Eucalyptus grandis
Eucgr.I02272 10.0kb upstream 10.0kb upstream 10000 false Chr09: 33086363-33096362 Eucalyptus grandis
Eucgr.I02272 10.0kb downstream 10.0kb downstream 11000 true Chr09: 33096363-33107362 Eucalyptus grandis
Eucgr.I02272 10.0kb downstream 10.0kb downstream 10000 false Chr09: 33097363-33107362 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050377 5270 Rosid View MSA
123739053 5271 Pentapetalae View MSA
122787192 5272 Eudicot View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7071 0.0 38.0303   High
cufflinks 2.34427 0.0 6.93729   Low
cufflinks 16.6464 0.0 40.6147   High
cufflinks 4.5173 0.0 12.6312    
cufflinks 3.28698 0.0 9.39779    
cufflinks 10.3815 0.0 26.055    

0 Strain