Gene : Eucgr.I02605 E. grandis v2.0
Defline:  (1 of 2) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  2198
Name:  ? Eucgr.I02605 Secondary Identifier:  ? PAC:32063616
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis VALDEG-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02605 0.5kb upstream 0.5kb upstream 9244 true Chr09: 37325589-37334832 Eucalyptus grandis
Eucgr.I02605 0.5kb upstream 0.5kb upstream 500 false Chr09: 37325589-37326088 Eucalyptus grandis
Eucgr.I02605 0.5kb downstream 0.5kb downstream 9244 true Chr09: 37326089-37335332 Eucalyptus grandis
Eucgr.I02605 0.5kb downstream 0.5kb downstream 500 false Chr09: 37334833-37335332 Eucalyptus grandis
Eucgr.I02605 1.0kb upstream 1.0kb upstream 9744 true Chr09: 37325089-37334832 Eucalyptus grandis
Eucgr.I02605 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37325089-37326088 Eucalyptus grandis
Eucgr.I02605 1.0kb downstream 1.0kb downstream 9744 true Chr09: 37326089-37335832 Eucalyptus grandis
Eucgr.I02605 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37334833-37335832 Eucalyptus grandis
Eucgr.I02605 2.0kb upstream 2.0kb upstream 10744 true Chr09: 37324089-37334832 Eucalyptus grandis
Eucgr.I02605 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37324089-37326088 Eucalyptus grandis
Eucgr.I02605 2.0kb downstream 2.0kb downstream 10744 true Chr09: 37326089-37336832 Eucalyptus grandis
Eucgr.I02605 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37334833-37336832 Eucalyptus grandis
Eucgr.I02605 5.0kb upstream 5.0kb upstream 13744 true Chr09: 37321089-37334832 Eucalyptus grandis
Eucgr.I02605 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37321089-37326088 Eucalyptus grandis
Eucgr.I02605 5.0kb downstream 5.0kb downstream 13744 true Chr09: 37326089-37339832 Eucalyptus grandis
Eucgr.I02605 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37334833-37339832 Eucalyptus grandis
Eucgr.I02605 10.0kb upstream 10.0kb upstream 18744 true Chr09: 37316089-37334832 Eucalyptus grandis
Eucgr.I02605 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37316089-37326088 Eucalyptus grandis
Eucgr.I02605 10.0kb downstream 10.0kb downstream 18744 true Chr09: 37326089-37344832 Eucalyptus grandis
Eucgr.I02605 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37334833-37344832 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780918 5273 Angiosperm View MSA
124071727 5270 Rosid View MSA
123748275 5271 Pentapetalae View MSA
122772530 5272 Eudicot View MSA
121052516 5274 Embryophyte View MSA
123092560 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.13072 0.0 21.1678    
cufflinks 10.602 0.0 24.1881    
cufflinks 10.6561 0.0 26.9857    
cufflinks 7.48946 0.0 20.4035   Low
cufflinks 8.02002 0.0 19.9729    
cufflinks 13.5199 0.0 30.2699   High

0 Strain