Gene : Eucgr.J00167 E. grandis v2.0
Defline:  (1 of 2) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  148
Name:  ? Eucgr.J00167 Secondary Identifier:  ? PAC:32032677
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-3461 Eucalyptus grandis pathologic  
Egrandis PWY-3462 Eucalyptus grandis pathologic  
Egrandis PWY-3481 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00167 0.5kb upstream 0.5kb upstream 5318 true Chr10: 1788979-1794296 Eucalyptus grandis
Eucgr.J00167 0.5kb upstream 0.5kb upstream 500 false Chr10: 1788979-1789478 Eucalyptus grandis
Eucgr.J00167 0.5kb downstream 0.5kb downstream 5318 true Chr10: 1789479-1794796 Eucalyptus grandis
Eucgr.J00167 0.5kb downstream 0.5kb downstream 500 false Chr10: 1794297-1794796 Eucalyptus grandis
Eucgr.J00167 1.0kb upstream 1.0kb upstream 5818 true Chr10: 1788479-1794296 Eucalyptus grandis
Eucgr.J00167 1.0kb upstream 1.0kb upstream 1000 false Chr10: 1788479-1789478 Eucalyptus grandis
Eucgr.J00167 1.0kb downstream 1.0kb downstream 5818 true Chr10: 1789479-1795296 Eucalyptus grandis
Eucgr.J00167 1.0kb downstream 1.0kb downstream 1000 false Chr10: 1794297-1795296 Eucalyptus grandis
Eucgr.J00167 2.0kb upstream 2.0kb upstream 6818 true Chr10: 1787479-1794296 Eucalyptus grandis
Eucgr.J00167 2.0kb upstream 2.0kb upstream 2000 false Chr10: 1787479-1789478 Eucalyptus grandis
Eucgr.J00167 2.0kb downstream 2.0kb downstream 6818 true Chr10: 1789479-1796296 Eucalyptus grandis
Eucgr.J00167 2.0kb downstream 2.0kb downstream 2000 false Chr10: 1794297-1796296 Eucalyptus grandis
Eucgr.J00167 5.0kb upstream 5.0kb upstream 9818 true Chr10: 1784479-1794296 Eucalyptus grandis
Eucgr.J00167 5.0kb upstream 5.0kb upstream 5000 false Chr10: 1784479-1789478 Eucalyptus grandis
Eucgr.J00167 5.0kb downstream 5.0kb downstream 9818 true Chr10: 1789479-1799296 Eucalyptus grandis
Eucgr.J00167 5.0kb downstream 5.0kb downstream 5000 false Chr10: 1794297-1799296 Eucalyptus grandis
Eucgr.J00167 10.0kb upstream 10.0kb upstream 14818 true Chr10: 1779479-1794296 Eucalyptus grandis
Eucgr.J00167 10.0kb upstream 10.0kb upstream 10000 false Chr10: 1779479-1789478 Eucalyptus grandis
Eucgr.J00167 10.0kb downstream 10.0kb downstream 14818 true Chr10: 1789479-1804296 Eucalyptus grandis
Eucgr.J00167 10.0kb downstream 10.0kb downstream 10000 false Chr10: 1794297-1804296 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062994 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.8781 0.0 66.6374 High  
cufflinks 30.172 0.0 67.1937    
cufflinks 24.9838 0.0 56.0648    
cufflinks 39.6888 0.0 87.8784 High  
cufflinks 58.904 0.0 130.381 High High
cufflinks 13.7619 0.0 32.2909   Low

0 Strain