Gene : Eucgr.J00690 E. grandis v2.0
Defline:  (1 of 2) PTHR11451:SF21 - BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE Genomic Order:  606
Name:  ? Eucgr.J00690 Secondary Identifier:  ? PAC:32034765
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00690 0.5kb upstream 0.5kb upstream 7153 true Chr10: 7377811-7384963 Eucalyptus grandis
Eucgr.J00690 0.5kb upstream 0.5kb upstream 500 false Chr10: 7377811-7378310 Eucalyptus grandis
Eucgr.J00690 0.5kb downstream 0.5kb downstream 7153 true Chr10: 7378311-7385463 Eucalyptus grandis
Eucgr.J00690 0.5kb downstream 0.5kb downstream 500 false Chr10: 7384964-7385463 Eucalyptus grandis
Eucgr.J00690 1.0kb upstream 1.0kb upstream 7653 true Chr10: 7377311-7384963 Eucalyptus grandis
Eucgr.J00690 1.0kb upstream 1.0kb upstream 1000 false Chr10: 7377311-7378310 Eucalyptus grandis
Eucgr.J00690 1.0kb downstream 1.0kb downstream 7653 true Chr10: 7378311-7385963 Eucalyptus grandis
Eucgr.J00690 1.0kb downstream 1.0kb downstream 1000 false Chr10: 7384964-7385963 Eucalyptus grandis
Eucgr.J00690 2.0kb upstream 2.0kb upstream 8653 true Chr10: 7376311-7384963 Eucalyptus grandis
Eucgr.J00690 2.0kb upstream 2.0kb upstream 2000 false Chr10: 7376311-7378310 Eucalyptus grandis
Eucgr.J00690 2.0kb downstream 2.0kb downstream 8653 true Chr10: 7378311-7386963 Eucalyptus grandis
Eucgr.J00690 2.0kb downstream 2.0kb downstream 2000 false Chr10: 7384964-7386963 Eucalyptus grandis
Eucgr.J00690 5.0kb upstream 5.0kb upstream 11653 true Chr10: 7373311-7384963 Eucalyptus grandis
Eucgr.J00690 5.0kb upstream 5.0kb upstream 5000 false Chr10: 7373311-7378310 Eucalyptus grandis
Eucgr.J00690 5.0kb downstream 5.0kb downstream 11653 true Chr10: 7378311-7389963 Eucalyptus grandis
Eucgr.J00690 5.0kb downstream 5.0kb downstream 5000 false Chr10: 7384964-7389963 Eucalyptus grandis
Eucgr.J00690 10.0kb upstream 10.0kb upstream 16653 true Chr10: 7368311-7384963 Eucalyptus grandis
Eucgr.J00690 10.0kb upstream 10.0kb upstream 10000 false Chr10: 7368311-7378310 Eucalyptus grandis
Eucgr.J00690 10.0kb downstream 10.0kb downstream 16653 true Chr10: 7378311-7394963 Eucalyptus grandis
Eucgr.J00690 10.0kb downstream 10.0kb downstream 10000 false Chr10: 7384964-7394963 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.0269 0.0 95.8801 High High
cufflinks 30.1513 0.0 75.0599    
cufflinks 29.9011 0.0 76.4418 High  
cufflinks 33.8787 0.0 89.5006    
cufflinks 27.9391 0.0 72.9439   Low
cufflinks 30.6715 0.0 77.2756    

0 Strain