Gene : Eucgr.J01909 E. grandis v2.0
Defline:  (1 of 2) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  1603
Name:  ? Eucgr.J01909 Secondary Identifier:  ? PAC:32033934
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01909 0.5kb upstream 0.5kb upstream 4720 true Chr10: 24479820-24484539 Eucalyptus grandis
Eucgr.J01909 0.5kb upstream 0.5kb upstream 500 false Chr10: 24484040-24484539 Eucalyptus grandis
Eucgr.J01909 0.5kb downstream 0.5kb downstream 4720 true Chr10: 24479320-24484039 Eucalyptus grandis
Eucgr.J01909 0.5kb downstream 0.5kb downstream 500 false Chr10: 24479320-24479819 Eucalyptus grandis
Eucgr.J01909 1.0kb upstream 1.0kb upstream 5220 true Chr10: 24479820-24485039 Eucalyptus grandis
Eucgr.J01909 1.0kb upstream 1.0kb upstream 1000 false Chr10: 24484040-24485039 Eucalyptus grandis
Eucgr.J01909 1.0kb downstream 1.0kb downstream 5220 true Chr10: 24478820-24484039 Eucalyptus grandis
Eucgr.J01909 1.0kb downstream 1.0kb downstream 1000 false Chr10: 24478820-24479819 Eucalyptus grandis
Eucgr.J01909 2.0kb upstream 2.0kb upstream 6220 true Chr10: 24479820-24486039 Eucalyptus grandis
Eucgr.J01909 2.0kb upstream 2.0kb upstream 2000 false Chr10: 24484040-24486039 Eucalyptus grandis
Eucgr.J01909 2.0kb downstream 2.0kb downstream 6220 true Chr10: 24477820-24484039 Eucalyptus grandis
Eucgr.J01909 2.0kb downstream 2.0kb downstream 2000 false Chr10: 24477820-24479819 Eucalyptus grandis
Eucgr.J01909 5.0kb upstream 5.0kb upstream 9220 true Chr10: 24479820-24489039 Eucalyptus grandis
Eucgr.J01909 5.0kb upstream 5.0kb upstream 5000 false Chr10: 24484040-24489039 Eucalyptus grandis
Eucgr.J01909 5.0kb downstream 5.0kb downstream 9220 true Chr10: 24474820-24484039 Eucalyptus grandis
Eucgr.J01909 5.0kb downstream 5.0kb downstream 5000 false Chr10: 24474820-24479819 Eucalyptus grandis
Eucgr.J01909 10.0kb upstream 10.0kb upstream 14220 true Chr10: 24479820-24494039 Eucalyptus grandis
Eucgr.J01909 10.0kb upstream 10.0kb upstream 10000 false Chr10: 24484040-24494039 Eucalyptus grandis
Eucgr.J01909 10.0kb downstream 10.0kb downstream 14220 true Chr10: 24469820-24484039 Eucalyptus grandis
Eucgr.J01909 10.0kb downstream 10.0kb downstream 10000 false Chr10: 24469820-24479819 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.78187 0.0 20.1793    
cufflinks 5.59037 0.0 16.2156    
cufflinks 6.83952 0.0 20.1652    
cufflinks 5.98528 0.0 14.2903    
cufflinks 0.752566 0.0 2.51412   Low
cufflinks 9.06069 0.0 21.0176    

0 Strain