Gene : Eucgr.J02313 E. grandis v2.0
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1963
Name:  ? Eucgr.J02313 Secondary Identifier:  ? PAC:32035128
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CHLOROPHYLL-SYN Eucalyptus grandis pathologic  
Egrandis HEME-BIOSYNTHESIS-II Eucalyptus grandis pathologic  
Egrandis PWY-5918 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02313 0.5kb upstream 0.5kb upstream 7187 true Chr10: 28339510-28346696 Eucalyptus grandis
Eucgr.J02313 0.5kb upstream 0.5kb upstream 500 false Chr10: 28339510-28340009 Eucalyptus grandis
Eucgr.J02313 0.5kb downstream 0.5kb downstream 7187 true Chr10: 28340010-28347196 Eucalyptus grandis
Eucgr.J02313 0.5kb downstream 0.5kb downstream 500 false Chr10: 28346697-28347196 Eucalyptus grandis
Eucgr.J02313 1.0kb upstream 1.0kb upstream 7687 true Chr10: 28339010-28346696 Eucalyptus grandis
Eucgr.J02313 1.0kb upstream 1.0kb upstream 1000 false Chr10: 28339010-28340009 Eucalyptus grandis
Eucgr.J02313 1.0kb downstream 1.0kb downstream 7687 true Chr10: 28340010-28347696 Eucalyptus grandis
Eucgr.J02313 1.0kb downstream 1.0kb downstream 1000 false Chr10: 28346697-28347696 Eucalyptus grandis
Eucgr.J02313 2.0kb upstream 2.0kb upstream 8687 true Chr10: 28338010-28346696 Eucalyptus grandis
Eucgr.J02313 2.0kb upstream 2.0kb upstream 2000 false Chr10: 28338010-28340009 Eucalyptus grandis
Eucgr.J02313 2.0kb downstream 2.0kb downstream 8687 true Chr10: 28340010-28348696 Eucalyptus grandis
Eucgr.J02313 2.0kb downstream 2.0kb downstream 2000 false Chr10: 28346697-28348696 Eucalyptus grandis
Eucgr.J02313 5.0kb upstream 5.0kb upstream 11687 true Chr10: 28335010-28346696 Eucalyptus grandis
Eucgr.J02313 5.0kb upstream 5.0kb upstream 5000 false Chr10: 28335010-28340009 Eucalyptus grandis
Eucgr.J02313 5.0kb downstream 5.0kb downstream 11687 true Chr10: 28340010-28351696 Eucalyptus grandis
Eucgr.J02313 5.0kb downstream 5.0kb downstream 5000 false Chr10: 28346697-28351696 Eucalyptus grandis
Eucgr.J02313 10.0kb upstream 10.0kb upstream 16687 true Chr10: 28330010-28346696 Eucalyptus grandis
Eucgr.J02313 10.0kb upstream 10.0kb upstream 10000 false Chr10: 28330010-28340009 Eucalyptus grandis
Eucgr.J02313 10.0kb downstream 10.0kb downstream 16687 true Chr10: 28340010-28356696 Eucalyptus grandis
Eucgr.J02313 10.0kb downstream 10.0kb downstream 10000 false Chr10: 28346697-28356696 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.2183 0.0 42.6821    
cufflinks 5.04432 0.0 12.1636   Low
cufflinks 15.8968 0.0 35.4403    
cufflinks 6.36295 0.0 14.9779    
cufflinks 8.07013 0.0 18.7091    
cufflinks 28.2125 0.0 62.3924   High

0 Strain