Gene : Eucgr.K00393 E. grandis v2.0
Defline:  (1 of 1) PF09341 - Transcription factor Pcc1 (Pcc1) Genomic Order:  306
Name:  ? Eucgr.K00393 Secondary Identifier:  ? PAC:32067893
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00393 0.5kb upstream 0.5kb upstream 2334 true Chr11: 3545701-3548034 Eucalyptus grandis
Eucgr.K00393 0.5kb upstream 0.5kb upstream 500 false Chr11: 3547535-3548034 Eucalyptus grandis
Eucgr.K00393 0.5kb downstream 0.5kb downstream 2334 true Chr11: 3545201-3547534 Eucalyptus grandis
Eucgr.K00393 0.5kb downstream 0.5kb downstream 500 false Chr11: 3545201-3545700 Eucalyptus grandis
Eucgr.K00393 1.0kb upstream 1.0kb upstream 2834 true Chr11: 3545701-3548534 Eucalyptus grandis
Eucgr.K00393 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3547535-3548534 Eucalyptus grandis
Eucgr.K00393 1.0kb downstream 1.0kb downstream 2834 true Chr11: 3544701-3547534 Eucalyptus grandis
Eucgr.K00393 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3544701-3545700 Eucalyptus grandis
Eucgr.K00393 2.0kb upstream 2.0kb upstream 3834 true Chr11: 3545701-3549534 Eucalyptus grandis
Eucgr.K00393 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3547535-3549534 Eucalyptus grandis
Eucgr.K00393 2.0kb downstream 2.0kb downstream 3834 true Chr11: 3543701-3547534 Eucalyptus grandis
Eucgr.K00393 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3543701-3545700 Eucalyptus grandis
Eucgr.K00393 5.0kb upstream 5.0kb upstream 6834 true Chr11: 3545701-3552534 Eucalyptus grandis
Eucgr.K00393 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3547535-3552534 Eucalyptus grandis
Eucgr.K00393 5.0kb downstream 5.0kb downstream 6834 true Chr11: 3540701-3547534 Eucalyptus grandis
Eucgr.K00393 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3540701-3545700 Eucalyptus grandis
Eucgr.K00393 10.0kb upstream 10.0kb upstream 11834 true Chr11: 3545701-3557534 Eucalyptus grandis
Eucgr.K00393 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3547535-3557534 Eucalyptus grandis
Eucgr.K00393 10.0kb downstream 10.0kb downstream 11834 true Chr11: 3535701-3547534 Eucalyptus grandis
Eucgr.K00393 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3535701-3545700 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.1256 0.0 43.1884    
cufflinks 10.3389 0.0 25.7174    
cufflinks 9.32055 0.0 23.6266    
cufflinks 3.5079 0.0 9.72205   Low
cufflinks 10.2102 0.0 25.5733    
cufflinks 25.4478 0.0 59.2328   High

0 Strain