Gene : Eucgr.K00387 E. grandis v2.0
Defline:  (1 of 2) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  300
Name:  ? Eucgr.K00387 Secondary Identifier:  ? PAC:32065886
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis GLYCOGENSYNTH-PWY Eucalyptus grandis pathologic  
Egrandis PWY-622 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00387 0.5kb upstream 0.5kb upstream 7754 true Chr11: 3518747-3526500 Eucalyptus grandis
Eucgr.K00387 0.5kb upstream 0.5kb upstream 500 false Chr11: 3518747-3519246 Eucalyptus grandis
Eucgr.K00387 0.5kb downstream 0.5kb downstream 7754 true Chr11: 3519247-3527000 Eucalyptus grandis
Eucgr.K00387 0.5kb downstream 0.5kb downstream 500 false Chr11: 3526501-3527000 Eucalyptus grandis
Eucgr.K00387 1.0kb upstream 1.0kb upstream 8254 true Chr11: 3518247-3526500 Eucalyptus grandis
Eucgr.K00387 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3518247-3519246 Eucalyptus grandis
Eucgr.K00387 1.0kb downstream 1.0kb downstream 8254 true Chr11: 3519247-3527500 Eucalyptus grandis
Eucgr.K00387 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3526501-3527500 Eucalyptus grandis
Eucgr.K00387 2.0kb upstream 2.0kb upstream 9254 true Chr11: 3517247-3526500 Eucalyptus grandis
Eucgr.K00387 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3517247-3519246 Eucalyptus grandis
Eucgr.K00387 2.0kb downstream 2.0kb downstream 9254 true Chr11: 3519247-3528500 Eucalyptus grandis
Eucgr.K00387 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3526501-3528500 Eucalyptus grandis
Eucgr.K00387 5.0kb upstream 5.0kb upstream 12254 true Chr11: 3514247-3526500 Eucalyptus grandis
Eucgr.K00387 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3514247-3519246 Eucalyptus grandis
Eucgr.K00387 5.0kb downstream 5.0kb downstream 12254 true Chr11: 3519247-3531500 Eucalyptus grandis
Eucgr.K00387 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3526501-3531500 Eucalyptus grandis
Eucgr.K00387 10.0kb upstream 10.0kb upstream 17254 true Chr11: 3509247-3526500 Eucalyptus grandis
Eucgr.K00387 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3509247-3519246 Eucalyptus grandis
Eucgr.K00387 10.0kb downstream 10.0kb downstream 17254 true Chr11: 3519247-3536500 Eucalyptus grandis
Eucgr.K00387 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3526501-3536500 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.90825 0.0 21.7485    
cufflinks 7.53854 0.0 17.5301    
cufflinks 5.74455 0.0 17.9223    
cufflinks 9.75851 0.0 30.1109    
cufflinks 7.56068 0.0 17.6161    
cufflinks 32.322 0.0 75.3859   High

0 Strain