Gene : Eucgr.K00200 E. grandis v2.0
Defline:  (1 of 15) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  140
Name:  ? Eucgr.K00200 Secondary Identifier:  ? PAC:32068652
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00200 0.5kb upstream 0.5kb upstream 7878 true Chr11: 1466520-1474397 Eucalyptus grandis
Eucgr.K00200 0.5kb upstream 0.5kb upstream 500 false Chr11: 1473898-1474397 Eucalyptus grandis
Eucgr.K00200 0.5kb downstream 0.5kb downstream 7878 true Chr11: 1466020-1473897 Eucalyptus grandis
Eucgr.K00200 0.5kb downstream 0.5kb downstream 500 false Chr11: 1466020-1466519 Eucalyptus grandis
Eucgr.K00200 1.0kb upstream 1.0kb upstream 8378 true Chr11: 1466520-1474897 Eucalyptus grandis
Eucgr.K00200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1473898-1474897 Eucalyptus grandis
Eucgr.K00200 1.0kb downstream 1.0kb downstream 8378 true Chr11: 1465520-1473897 Eucalyptus grandis
Eucgr.K00200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1465520-1466519 Eucalyptus grandis
Eucgr.K00200 2.0kb upstream 2.0kb upstream 9378 true Chr11: 1466520-1475897 Eucalyptus grandis
Eucgr.K00200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1473898-1475897 Eucalyptus grandis
Eucgr.K00200 2.0kb downstream 2.0kb downstream 9378 true Chr11: 1464520-1473897 Eucalyptus grandis
Eucgr.K00200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1464520-1466519 Eucalyptus grandis
Eucgr.K00200 5.0kb upstream 5.0kb upstream 12378 true Chr11: 1466520-1478897 Eucalyptus grandis
Eucgr.K00200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1473898-1478897 Eucalyptus grandis
Eucgr.K00200 5.0kb downstream 5.0kb downstream 12378 true Chr11: 1461520-1473897 Eucalyptus grandis
Eucgr.K00200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1461520-1466519 Eucalyptus grandis
Eucgr.K00200 10.0kb upstream 10.0kb upstream 17378 true Chr11: 1466520-1483897 Eucalyptus grandis
Eucgr.K00200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1473898-1483897 Eucalyptus grandis
Eucgr.K00200 10.0kb downstream 10.0kb downstream 17378 true Chr11: 1456520-1473897 Eucalyptus grandis
Eucgr.K00200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1456520-1466519 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.3099 0.0 56.8281    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 18.7719 0.0 42.7916   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 28.1647 0.0 63.1527    

0 Strain