Gene : Eucgr.K00796 E. grandis v2.0
Defline:  (1 of 5) PTHR10969:SF43 - AUTOPHAGY-RELATED PROTEIN 8A-RELATED Genomic Order:  673
Name:  ? Eucgr.K00796 Secondary Identifier:  ? PAC:32067785
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00796 0.5kb upstream 0.5kb upstream 2651 true Chr11: 9395440-9398090 Eucalyptus grandis
Eucgr.K00796 0.5kb upstream 0.5kb upstream 500 false Chr11: 9397591-9398090 Eucalyptus grandis
Eucgr.K00796 0.5kb downstream 0.5kb downstream 2651 true Chr11: 9394940-9397590 Eucalyptus grandis
Eucgr.K00796 0.5kb downstream 0.5kb downstream 500 false Chr11: 9394940-9395439 Eucalyptus grandis
Eucgr.K00796 1.0kb upstream 1.0kb upstream 3151 true Chr11: 9395440-9398590 Eucalyptus grandis
Eucgr.K00796 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9397591-9398590 Eucalyptus grandis
Eucgr.K00796 1.0kb downstream 1.0kb downstream 3151 true Chr11: 9394440-9397590 Eucalyptus grandis
Eucgr.K00796 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9394440-9395439 Eucalyptus grandis
Eucgr.K00796 2.0kb upstream 2.0kb upstream 4151 true Chr11: 9395440-9399590 Eucalyptus grandis
Eucgr.K00796 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9397591-9399590 Eucalyptus grandis
Eucgr.K00796 2.0kb downstream 2.0kb downstream 4151 true Chr11: 9393440-9397590 Eucalyptus grandis
Eucgr.K00796 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9393440-9395439 Eucalyptus grandis
Eucgr.K00796 5.0kb upstream 5.0kb upstream 7151 true Chr11: 9395440-9402590 Eucalyptus grandis
Eucgr.K00796 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9397591-9402590 Eucalyptus grandis
Eucgr.K00796 5.0kb downstream 5.0kb downstream 7151 true Chr11: 9390440-9397590 Eucalyptus grandis
Eucgr.K00796 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9390440-9395439 Eucalyptus grandis
Eucgr.K00796 10.0kb upstream 10.0kb upstream 12151 true Chr11: 9395440-9407590 Eucalyptus grandis
Eucgr.K00796 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9397591-9407590 Eucalyptus grandis
Eucgr.K00796 10.0kb downstream 10.0kb downstream 12151 true Chr11: 9385440-9397590 Eucalyptus grandis
Eucgr.K00796 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9385440-9395439 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051270 5270 Rosid View MSA
123752408 5271 Pentapetalae View MSA
122791477 5272 Eudicot View MSA
122048918 5273 Angiosperm View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.4269 0.0 140.154 High Low
cufflinks 285.014 0.0 642.772 High High
cufflinks 59.5901 0.0 134.437 High Low
cufflinks 202.361 0.0 449.79 High  
cufflinks 167.748 0.0 371.769 High  
cufflinks 108.303 0.0 239.615 High  

0 Strain