Gene : Eucgr.K00563 E. grandis v2.0
Defline:  (1 of 2) PTHR11451:SF21 - BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE Genomic Order:  480
Name:  ? Eucgr.K00563 Secondary Identifier:  ? PAC:32068812
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00563 0.5kb upstream 0.5kb upstream 4948 true Chr11: 6275902-6280849 Eucalyptus grandis
Eucgr.K00563 0.5kb upstream 0.5kb upstream 500 false Chr11: 6280350-6280849 Eucalyptus grandis
Eucgr.K00563 0.5kb downstream 0.5kb downstream 4948 true Chr11: 6275402-6280349 Eucalyptus grandis
Eucgr.K00563 0.5kb downstream 0.5kb downstream 500 false Chr11: 6275402-6275901 Eucalyptus grandis
Eucgr.K00563 1.0kb upstream 1.0kb upstream 5448 true Chr11: 6275902-6281349 Eucalyptus grandis
Eucgr.K00563 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6280350-6281349 Eucalyptus grandis
Eucgr.K00563 1.0kb downstream 1.0kb downstream 5448 true Chr11: 6274902-6280349 Eucalyptus grandis
Eucgr.K00563 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6274902-6275901 Eucalyptus grandis
Eucgr.K00563 2.0kb upstream 2.0kb upstream 6448 true Chr11: 6275902-6282349 Eucalyptus grandis
Eucgr.K00563 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6280350-6282349 Eucalyptus grandis
Eucgr.K00563 2.0kb downstream 2.0kb downstream 6448 true Chr11: 6273902-6280349 Eucalyptus grandis
Eucgr.K00563 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6273902-6275901 Eucalyptus grandis
Eucgr.K00563 5.0kb upstream 5.0kb upstream 9448 true Chr11: 6275902-6285349 Eucalyptus grandis
Eucgr.K00563 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6280350-6285349 Eucalyptus grandis
Eucgr.K00563 5.0kb downstream 5.0kb downstream 9448 true Chr11: 6270902-6280349 Eucalyptus grandis
Eucgr.K00563 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6270902-6275901 Eucalyptus grandis
Eucgr.K00563 10.0kb upstream 10.0kb upstream 14448 true Chr11: 6275902-6290349 Eucalyptus grandis
Eucgr.K00563 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6280350-6290349 Eucalyptus grandis
Eucgr.K00563 10.0kb downstream 10.0kb downstream 14448 true Chr11: 6265902-6280349 Eucalyptus grandis
Eucgr.K00563 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6265902-6275901 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.9854 0.0 59.3259    
cufflinks 17.5246 0.0 39.5268    
cufflinks 22.3243 0.0 57.316    
cufflinks 13.4179 0.0 34.7552   Low
cufflinks 17.5401 0.0 45.7198    
cufflinks 23.5496 0.0 62.2687    

0 Strain