Gene : Eucgr.K00558 E. grandis v2.0
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  475
Name:  ? Eucgr.K00558 Secondary Identifier:  ? PAC:32066391
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CHLOROPHYLL-SYN Eucalyptus grandis pathologic  
Egrandis HEME-BIOSYNTHESIS-II Eucalyptus grandis pathologic  
Egrandis PWY-5918 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00558 0.5kb upstream 0.5kb upstream 7054 true Chr11: 6251685-6258738 Eucalyptus grandis
Eucgr.K00558 0.5kb upstream 0.5kb upstream 500 false Chr11: 6251685-6252184 Eucalyptus grandis
Eucgr.K00558 0.5kb downstream 0.5kb downstream 7054 true Chr11: 6252185-6259238 Eucalyptus grandis
Eucgr.K00558 0.5kb downstream 0.5kb downstream 500 false Chr11: 6258739-6259238 Eucalyptus grandis
Eucgr.K00558 1.0kb upstream 1.0kb upstream 7554 true Chr11: 6251185-6258738 Eucalyptus grandis
Eucgr.K00558 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6251185-6252184 Eucalyptus grandis
Eucgr.K00558 1.0kb downstream 1.0kb downstream 7554 true Chr11: 6252185-6259738 Eucalyptus grandis
Eucgr.K00558 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6258739-6259738 Eucalyptus grandis
Eucgr.K00558 2.0kb upstream 2.0kb upstream 8554 true Chr11: 6250185-6258738 Eucalyptus grandis
Eucgr.K00558 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6250185-6252184 Eucalyptus grandis
Eucgr.K00558 2.0kb downstream 2.0kb downstream 8554 true Chr11: 6252185-6260738 Eucalyptus grandis
Eucgr.K00558 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6258739-6260738 Eucalyptus grandis
Eucgr.K00558 5.0kb upstream 5.0kb upstream 11554 true Chr11: 6247185-6258738 Eucalyptus grandis
Eucgr.K00558 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6247185-6252184 Eucalyptus grandis
Eucgr.K00558 5.0kb downstream 5.0kb downstream 11554 true Chr11: 6252185-6263738 Eucalyptus grandis
Eucgr.K00558 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6258739-6263738 Eucalyptus grandis
Eucgr.K00558 10.0kb upstream 10.0kb upstream 16554 true Chr11: 6242185-6258738 Eucalyptus grandis
Eucgr.K00558 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6242185-6252184 Eucalyptus grandis
Eucgr.K00558 10.0kb downstream 10.0kb downstream 16554 true Chr11: 6252185-6268738 Eucalyptus grandis
Eucgr.K00558 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6258739-6268738 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.5958 0.0 57.5086    
cufflinks 3.50521 0.0 8.95438    
cufflinks 19.0211 0.0 43.0499    
cufflinks 3.01796 0.0 7.70397   Low
cufflinks 6.04145 0.0 14.287    
cufflinks 43.4839 0.0 100.748 High High

0 Strain