Gene : Eucgr.K01360 E. grandis v2.0
Defline:  (1 of 1) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  1142
Name:  ? Eucgr.K01360 Secondary Identifier:  ? PAC:32069267
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1269 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01360 0.5kb upstream 0.5kb upstream 5165 true Chr11: 16965307-16970471 Eucalyptus grandis
Eucgr.K01360 0.5kb upstream 0.5kb upstream 500 false Chr11: 16965307-16965806 Eucalyptus grandis
Eucgr.K01360 0.5kb downstream 0.5kb downstream 5165 true Chr11: 16965807-16970971 Eucalyptus grandis
Eucgr.K01360 0.5kb downstream 0.5kb downstream 500 false Chr11: 16970472-16970971 Eucalyptus grandis
Eucgr.K01360 1.0kb upstream 1.0kb upstream 5665 true Chr11: 16964807-16970471 Eucalyptus grandis
Eucgr.K01360 1.0kb upstream 1.0kb upstream 1000 false Chr11: 16964807-16965806 Eucalyptus grandis
Eucgr.K01360 1.0kb downstream 1.0kb downstream 5665 true Chr11: 16965807-16971471 Eucalyptus grandis
Eucgr.K01360 1.0kb downstream 1.0kb downstream 1000 false Chr11: 16970472-16971471 Eucalyptus grandis
Eucgr.K01360 2.0kb upstream 2.0kb upstream 6665 true Chr11: 16963807-16970471 Eucalyptus grandis
Eucgr.K01360 2.0kb upstream 2.0kb upstream 2000 false Chr11: 16963807-16965806 Eucalyptus grandis
Eucgr.K01360 2.0kb downstream 2.0kb downstream 6665 true Chr11: 16965807-16972471 Eucalyptus grandis
Eucgr.K01360 2.0kb downstream 2.0kb downstream 2000 false Chr11: 16970472-16972471 Eucalyptus grandis
Eucgr.K01360 5.0kb upstream 5.0kb upstream 9665 true Chr11: 16960807-16970471 Eucalyptus grandis
Eucgr.K01360 5.0kb upstream 5.0kb upstream 5000 false Chr11: 16960807-16965806 Eucalyptus grandis
Eucgr.K01360 5.0kb downstream 5.0kb downstream 9665 true Chr11: 16965807-16975471 Eucalyptus grandis
Eucgr.K01360 5.0kb downstream 5.0kb downstream 5000 false Chr11: 16970472-16975471 Eucalyptus grandis
Eucgr.K01360 10.0kb upstream 10.0kb upstream 14665 true Chr11: 16955807-16970471 Eucalyptus grandis
Eucgr.K01360 10.0kb upstream 10.0kb upstream 10000 false Chr11: 16955807-16965806 Eucalyptus grandis
Eucgr.K01360 10.0kb downstream 10.0kb downstream 14665 true Chr11: 16965807-16980471 Eucalyptus grandis
Eucgr.K01360 10.0kb downstream 10.0kb downstream 10000 false Chr11: 16970472-16980471 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.32 0.0 48.7436    
cufflinks 17.9764 0.0 41.328    
cufflinks 17.5912 0.0 40.6797    
cufflinks 39.0797 0.0 86.6955 High High
cufflinks 26.9674 0.0 60.6091    
cufflinks 11.3256 0.0 27.4733   Low

0 Strain