Gene : Eucgr.K01260 E. grandis v2.0
Defline:  (1 of 2) PF02359//PF02933//PF07724 - Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // AAA domain (Cdc48 subfamily) (AAA_2) Genomic Order:  1048
Name:  ? Eucgr.K01260 Secondary Identifier:  ? PAC:32068270
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01260 0.5kb upstream 0.5kb upstream 8805 true Chr11: 15992936-16001740 Eucalyptus grandis
Eucgr.K01260 0.5kb upstream 0.5kb upstream 500 false Chr11: 16001241-16001740 Eucalyptus grandis
Eucgr.K01260 0.5kb downstream 0.5kb downstream 8805 true Chr11: 15992436-16001240 Eucalyptus grandis
Eucgr.K01260 0.5kb downstream 0.5kb downstream 500 false Chr11: 15992436-15992935 Eucalyptus grandis
Eucgr.K01260 1.0kb upstream 1.0kb upstream 9305 true Chr11: 15992936-16002240 Eucalyptus grandis
Eucgr.K01260 1.0kb upstream 1.0kb upstream 1000 false Chr11: 16001241-16002240 Eucalyptus grandis
Eucgr.K01260 1.0kb downstream 1.0kb downstream 9305 true Chr11: 15991936-16001240 Eucalyptus grandis
Eucgr.K01260 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15991936-15992935 Eucalyptus grandis
Eucgr.K01260 2.0kb upstream 2.0kb upstream 10305 true Chr11: 15992936-16003240 Eucalyptus grandis
Eucgr.K01260 2.0kb upstream 2.0kb upstream 2000 false Chr11: 16001241-16003240 Eucalyptus grandis
Eucgr.K01260 2.0kb downstream 2.0kb downstream 10305 true Chr11: 15990936-16001240 Eucalyptus grandis
Eucgr.K01260 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15990936-15992935 Eucalyptus grandis
Eucgr.K01260 5.0kb upstream 5.0kb upstream 13305 true Chr11: 15992936-16006240 Eucalyptus grandis
Eucgr.K01260 5.0kb upstream 5.0kb upstream 5000 false Chr11: 16001241-16006240 Eucalyptus grandis
Eucgr.K01260 5.0kb downstream 5.0kb downstream 13305 true Chr11: 15987936-16001240 Eucalyptus grandis
Eucgr.K01260 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15987936-15992935 Eucalyptus grandis
Eucgr.K01260 10.0kb upstream 10.0kb upstream 18305 true Chr11: 15992936-16011240 Eucalyptus grandis
Eucgr.K01260 10.0kb upstream 10.0kb upstream 10000 false Chr11: 16001241-16011240 Eucalyptus grandis
Eucgr.K01260 10.0kb downstream 10.0kb downstream 18305 true Chr11: 15982936-16001240 Eucalyptus grandis
Eucgr.K01260 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15982936-15992935 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051216 5270 Rosid View MSA
123753569 5271 Pentapetalae View MSA
122797927 5272 Eudicot View MSA
122051596 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121350518 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.49074 0.0 6.51147    
cufflinks 5.72903 0.0 13.7392    
cufflinks 3.24809 0.0 8.23813    
cufflinks 8.27207 0.0 19.1454    
cufflinks 13.0249 0.0 29.3401   High
cufflinks 1.32108 0.0 3.69129   Low

0 Strain